Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05189 ATGGCTCTCATCACCAATCCTCCTGAACAATCCCACTGCAAAAAAACACTCCCAAAACAAAAACACAAAACTCAACAAAAGCAACAAGAACAGAATCAAAAACAAAAACAAAAACAAAAACAGAAACAAAAACAAAAGCCAGCATCTTCATGGGACCAAATAAAAAACATCCTAACTTGCAAACAGATCGAAGGCTCCACCGTTCACGATCCTTCAAAACCAAACAACAGTTATTCAAAATTAGGTTCATCTTGTAGCTCAATTTGTAGCTTCAGAGATGCCGTTCATGGAAACACTCGAGTTGTTCATAGGTCTGATAATTCATCACCAGAAAGTAGCATCTTAGGTCAAGAAACAAGTTTACTCAAAAGAAAACCTGTCACTGCCACTGCCACTGCTTCATCATCATCATCATCATCATCAAGAACTCGTTCTGCAACATATTCTGCGAAATCCAACGGTGGAAATAACTACACGCCATCATCTTCCAGAGGAATGCAGTTCAGAAAACTCTCTGGTTGTTATGAATGTCACATGATCGTTGACCCTAGCAGGCTAGCAATTCCTAGGAGCACAGTGTGTGCTTGTGATCAGTGTGGAGAGGTTTTTCCTAAGATTGAAAGCTTGCAGCTTCATCAAGCTGTTCGTCATGCTGTTTCGGAGCTGGGTCCGGAAGATTCGGGTCGGAACATAGTGGAAATAATATTCAAGTCAAGTTGGTTGAAGAGGGAGAGTCCAATGTGTAAGATCGAACGGATATTAAAAGTCCACAACACCCAACGAACAATCCAACGGTTCGAGGAATGCCGAGACGCAGTAAAATCCCGTGCAACCGCCACCACGAAGAAAAACCCTCGCTGCGCCGCAGACGGCAACGAACTCCTTCGTTTCCACAGCACAACCTTATCCTGCGCACTAGGCGCACGTGGATCCTCCTCCTTGTGCGCCACCGTACCTGGTTGCGGAGTGTGCACGATCATCCGGCACGGTTTTCAAAGCAAAGGAGGTGTGAAAACCAACGCTAGCAGTGGTAGGGCCCACGATAATTCAAATGGAAGGATCGGAGAAGATTCTAGAAGAGCGATGCTGGTGTGCCGTGTGATAGCCGGGAAAGTGAAGCGCGTGGCGGAGGAAGGTGCGCCGCCGATAACGGAGGAGGAAACGGTGTCATTTGATTCTGTTGCGGGTGACGCGGGAATTTACTCGAATCTTGAGGATCTAACCGTTTTCAATCCAAGGGCTATCCTTCCTTGTTTCGTGGTAATCTACAAGGTGCTCCCATGCTGA 1287 0.4615 MALITNPPEQSHCKKTLPKQKHKTQQKQQEQNQKQKQKQKQKQKQKPASSWDQIKNILTCKQIEGSTVHDPSKPNNSYSKLGSSCSSICSFRDAVHGNTRVVHRSDNSSPESSILGQETSLLKRKPVTATATASSSSSSSSRTRSATYSAKSNGGNNYTPSSSRGMQFRKLSGCYECHMIVDPSRLAIPRSTVCACDQCGEVFPKIESLQLHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKRESPMCKIERILKVHNTQRTIQRFEECRDAVKSRATATTKKNPRCAADGNELLRFHSTTLSCALGARGSSSLCATVPGCGVCTIIRHGFQSKGGVKTNASSGRAHDNSNGRIGEDSRRAMLVCRVIAGKVKRVAEEGAPPITEEETVSFDSVAGDAGIYSNLEDLTVFNPRAILPCFVVIYKVLPC 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05189 428 FunFam C2H2-like zinc finger protein 218 424 - -
Vifa3g05189 428 SUPERFAMILY ADP-ribosylation 219 424 - -
Vifa3g05189 428 ProSitePatterns Zinc finger C2H2 type domain signature. 194 217 IPR013087 -
Vifa3g05189 428 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 49 423 - -
Vifa3g05189 428 MobiDBLite consensus disorder prediction 101 164 - -
Vifa3g05189 428 Gene3D - 218 425 - -
Vifa3g05189 428 MobiDBLite consensus disorder prediction 23 37 - -
Vifa3g05189 428 MobiDBLite consensus disorder prediction 1 54 - -
Vifa3g05189 428 Coils Coil 19 46 - -
Vifa3g05189 428 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 222 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05189 Vifa-Chr3 1515596612 1515599380 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g05189 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05189 3 1515596612 1515599380 Vifa3g05189 3 1515596612 1515599380 ECH