Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05177 ATGGGAGTCCCAGCGTTCTACAGATGGCTTGCAGAGAAATATCCGATGGTGATTGTCGATTCCGTCGAGGAAGAAGCGGTTGTTATCGAGGGCGTTCCAATTCCAATCGATACGAGTAAGCCAAACCCTAACGACATCGAATATGACAATCTTTATCTTGATATGAACGGTATCATTCATCCTTGTTTTCATCCCGAGGATAGGCCATCTCCGACTTCTTTTGAGGAGGTGTTTGAGTGTATGTTTGATTACATTGATAGGCTGTTTAACATGGTGCGGCCAAGGAAGTTGCTCTTTATGGCTATTGATGGTGTTGCGCCAAGGGCTAAAATGAACCAGCAACGGTCTAGGCGGTTTAGGTCGGCTAAAGACTCATCTGATGCGGCTGCTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAGGGAGGGAAGAAAACTTCCTCCCAAAGAAGAGTCACAGACTTTCGATTCAAATGTAATCACACCTGGAACTGAATTCATGGCTGTTTTGTCAGTTGCACTTCAGTACTATATTCATCTTAGGCTGAACAATGATCCTGGTTGGACTAATATCAAGGTTATTCTCTCTGATGCAAATGTTCCGGGTGAAGGGGAGCATAAGATTATGTCCTATATCCGCCTTCAAAGAAATCTTGAAGGATATGATCCGAATACACGACATTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTAGGTTTGGCTACACATGAAATCCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGACAAGACAAATGCTTTGTGTGTGGTCAGATGGGTCATATGGCGGCAGATTGTCAAGGAAAGGCTAAAAGGAAGTCGGGAGAATTTGATGAAAAAGGAGATGCCATCGTTGCTAAAAAGCCCTTCCAGTTTCTGAACATTTGGACTTTGAGGGAATATCTGGAGTATGAAATGAGAATACCTAATCCTCCTTTCGAGATTGATTTTGAATGCATATTGGATGATTTTATCTTCATATGCTTTTTTGTTGGAAATGATTTCCTACCACATATGCCTACGCTGGAGATTCGCGAGGGTGCAATTAACTTGCTGATGGCAGTATACAAGAAGGAATTTAGGGAATTGGGTGGTTATTTGACAAATGGTAGTAAGCCAAATTTAAGCAAAGTGGAGCATTTTATTCAGGCTGTTGGATCATATGAAGATAGCATATTCCTGAAAAGAGCACGATTGCAACAGCGACAAGTTGAAAGAATAAAGCGTCAGAAGTCACAAGCAAGAAGAGGCGACGATGTTGGGCCTCAAGTTCAACCCGAGTCTCTAGTTGCCGTTTCACAATTCCACGGTTCTCGTCTTGCTTCAGCTCCAACGCCTTCACCGTTTCAACAATCTGGGCCTACTTCAGTTAGTAAAGGCAATAATGAAGTCTTTGAGAGGCCCAGTAAAGTGTCTAGATCGTCTTCAGAAGCAACTGTTGCTGCTGCAATTGTTGAAGCTGAGAACAGTCTGGAAATGGATGCTCAAGATAATAAAGACGACTTGAAAATAAAGCTGAAGGGGATACTTCGTGACAAAAATGATGTGTTCAACTCAAAAGATGGTCACGAGGACAAGATTAAGTTGGGAGAACCTGGCTGGAAAGAGAGGTATTATGAGGAAAAATTTTCTGCTCAAACTCCGGAGGAACTTGATGCCATACGGAAAGATGTTGTCTTGAAATACACAGAAGGTCTATGTTGGGTGATGCATTACTATTATGAAGGTGTTTGTTCTTGGCAATGGTTTTATCCTTATCATTACGCCCCTTTTGCGTCTGATCTCAAGGACCTTGGTGGGCTTAATATTAACTTTGAGTTGGGTACTCCATTCAAACCATTTGATCAGCTTCTTGGAGTTTTTCCTGCCGCAAGCTCTCATGCTCTGCCTGAGCCGTATAGGAAACTTATGACTGATCCAAATTCGCCAATTATTGACTTTTATCCAATAGATTTTGAAGTGGACATGAATGGCAAACGCTATGCTTGGCAGGGTATTGCAAAGTTGCCTTTTATTGATGAAGTGCGACTTCTTCAGGAAGTTCGGAAAGTAGAGAACTTGTTAACGCCAGAGGAAAAGCGACGGAATGCAATAATGTTCGAGATGCTTTTTGTGAATTTGTGTCATCCTCTCTCTGCGTGCATTAGTACACTCGACAACAAATGTAGAAACATGTCCAACACTGAACGTGCTGATGTCAAGGAAAAAATAGATCCCAATGAAAGTGGTGGAATGAATGGTTACATATCCTTATGTGGTGGAGAACCTTGCCCTCCCATATTCAGGTCCCCTATTGCAGGCATGGAAGACATCATGGATAATCATGTCATATGTGCAATCTATAGACTTCCGGACGTGCATGAACATATAACCCGACCACCACCTGGAGTAAAATTTCCAAAGAAGATTGTGACGCTTGGGGATCTACAACCTGAAGCTGTTCCATGGCATGAAGATAATGGTAGGAGATATAACGAAAGTGGAAGGAAAAACCCACCGGGATCCATTTCTGGCCGGGAGCTTGGAGAGGCAGCACACAGACTTGTTGCCAATTCCTTACAGGTCAGGTCGGATGCAAATAGATACCATCATCCTAATGGATCAACGATGCCTTATAATGGACCAAGGGGTCATAGACACTCATACCCTCGCAATAACTATGAATCGGGCCCTGGCCATAACTATGAATCGCGCCCTGGCTATAACTACGAGTCACGCCCCGGCTATGCTGCTGCACTTCAACCGCCTTTATTAGCTCCTCCACAGTATGTACCTTATGCTGCCCCTACTGTGCAGTATGGTTATAACCAACCATACACTCCACCGGTGATTCATAGTCCTCATCAACATCAATCAAATTCCTTTCCTAGAGGAAACAATCAGAATCCGCGCTTTACAAATACACAAGGTTCATATCCCCGTCAAAGTCATCATGATTCTGGTCGCCACAGCCAAAACTTCCAACCATATAGAGGAGGTTCTGACCAGCATTGGATTCCACGGGGTAACCATAGTGGGTATAGAGATTATGGTCAACACTCAGCTAATCATTATTCTGTATTAGATAGAGGAGCAGGCAGGAACAATCGTGGCAAATAA 3129 0.4305 MGVPAFYRWLAEKYPMVIVDSVEEEAVVIEGVPIPIDTSKPNPNDIEYDNLYLDMNGIIHPCFHPEDRPSPTSFEEVFECMFDYIDRLFNMVRPRKLLFMAIDGVAPRAKMNQQRSRRFRSAKDSSDAAAEEARLREEFEREGRKLPPKEESQTFDSNVITPGTEFMAVLSVALQYYIHLRLNNDPGWTNIKVILSDANVPGEGEHKIMSYIRLQRNLEGYDPNTRHCLYGLDADLIMLGLATHEIHFSILREVVFTPGQDKCFVCGQMGHMAADCQGKAKRKSGEFDEKGDAIVAKKPFQFLNIWTLREYLEYEMRIPNPPFEIDFECILDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRELGGYLTNGSKPNLSKVEHFIQAVGSYEDSIFLKRARLQQRQVERIKRQKSQARRGDDVGPQVQPESLVAVSQFHGSRLASAPTPSPFQQSGPTSVSKGNNEVFERPSKVSRSSSEATVAAAIVEAENSLEMDAQDNKDDLKIKLKGILRDKNDVFNSKDGHEDKIKLGEPGWKERYYEEKFSAQTPEELDAIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGGLNINFELGTPFKPFDQLLGVFPAASSHALPEPYRKLMTDPNSPIIDFYPIDFEVDMNGKRYAWQGIAKLPFIDEVRLLQEVRKVENLLTPEEKRRNAIMFEMLFVNLCHPLSACISTLDNKCRNMSNTERADVKEKIDPNESGGMNGYISLCGGEPCPPIFRSPIAGMEDIMDNHVICAIYRLPDVHEHITRPPPGVKFPKKIVTLGDLQPEAVPWHEDNGRRYNESGRKNPPGSISGRELGEAAHRLVANSLQVRSDANRYHHPNGSTMPYNGPRGHRHSYPRNNYESGPGHNYESRPGYNYESRPGYAAALQPPLLAPPQYVPYAAPTVQYGYNQPYTPPVIHSPHQHQSNSFPRGNNQNPRFTNTQGSYPRQSHHDSGRHSQNFQPYRGGSDQHWIPRGNHSGYRDYGQHSANHYSVLDRGAGRNNRGK 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05177 1042 MobiDBLite consensus disorder prediction 113 156 - -
Vifa3g05177 1042 MobiDBLite consensus disorder prediction 948 1022 - -
Vifa3g05177 1042 MobiDBLite consensus disorder prediction 948 985 - -
Vifa3g05177 1042 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Vifa3g05177 1042 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Vifa3g05177 1042 Gene3D - 146 384 - -
Vifa3g05177 1042 Gene3D - 1 134 - -
Vifa3g05177 1042 PANTHER 5'->3' EXORIBONUCLEASE 1 999 IPR027073 -
Vifa3g05177 1042 CDD PIN_XRN1-2-like 51 312 - -
Vifa3g05177 1042 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Vifa3g05177 1042 Gene3D - 611 708 - -
Vifa3g05177 1042 FunFam 5'-3' exoribonuclease 1 136 - -
Vifa3g05177 1042 MobiDBLite consensus disorder prediction 823 849 - -
Vifa3g05177 1042 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Vifa3g05177 1042 MobiDBLite consensus disorder prediction 117 151 - -
Vifa3g05177 1042 FunFam 5'-3' exoribonuclease 149 372 - -
Vifa3g05177 1042 MobiDBLite consensus disorder prediction 415 435 - -
Vifa3g05177 1042 FunFam 5'-3' exoribonuclease 608 708 - -
Vifa3g05177 1042 PIRSF Exonuclease_Xrn2 1 1029 IPR017151 GO:0004534|GO:0005634|GO:0006139
Vifa3g05177 1042 Pfam Xrn1 helical domain 325 819 IPR041412 -
Vifa3g05177 1042 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Vifa3g05177 1042 MobiDBLite consensus disorder prediction 449 482 - -
Vifa3g05177 1042 MobiDBLite consensus disorder prediction 866 911 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05177 Vifa-Chr3 1513842942 1513852519 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05177 3 1513842942 1513852519 Vifa3g05177 3 1513842942 1513852519 ECH