Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05175 ATGGACCGAAGGTGGCCTTGGAAGAAAAAATCATCTGATAAAACTGTGCTTGACAAAGTAGCTGCTGAATTGGATTCTGCTGGTGTCTCTAATCAGGAAAATCAGGATGTTTATAAAAAGCCGAACTATGTCCAAATCTCTGTAGAGTCATATTCACATCTGACGGGTTTGGAAGAACAAGTGAAGTCATATGAAGAAAAGGTAGAGACACTTGAGGATGAGATTGCAGAATTAAATGAAAAACTATCAGCAGCAAACACTGAGATAAATACCAAGGAAGGTTTGGTAAAACAACATGCTAAAGTAGCTGAAGATGCTGTCTCAGGCTGGGAAAAGGCAGAAGCAGAAGCTTTGGCCTTGAAGAACCATCTAGAATCTGTCACTCTTTCAAAACTTACTGCTGAGGATCAGGCGTCGCAGTTAGATGGTGCTCTTAAGGAGTGTATGCGACAGATAAGAAACCTGAAAGAAGAACATGAACTGAAAATACAGGATGTCGTCCTTGCAAAAACCAAGCAATTGGACAAGATTAAAGGTGAGTTTGAGGCTAGGATACGGAACTTTGAACAGGAACTCCTCAGATCTGCTGCTGATAATGCGGCTCTGTCAAGGTCCTTACAGGAACGTTCTAACATGCTAGTCAAACTAAGTGAAGAAAAAGCTCATGCTGAGGCTGAAATTGAGCATCATAAGAGCAACGTAGAATCATGTGAAAGAGAAATCAATTCACTTAAATATGAGCTTCATGTTATTTCCAAAGAGCTTGAAATTCGTAATGAAGAAAAGAACATGAGTATGAGGTCTGCAGAAGCTGCTAACAAGCAGCATGCAGAGGGTGTAAAAAAAATTGCCAAGTTAGAGGCAGAATGCCAAAGGTTACGTGGTCTAGTACGGAAAAAGTTACCTGGTCCTGCTGCGCTTGCACAAATGAAGCTGGAAGTTGAAAGTCTTGGCCGAGATTACGGAGAAACTCGATTAAGGAAGTCTCCTGTCAAACCTGCTAGTTCTCATTACTCTACGGTGCCTGATTTCTCCCTGGAGAATATACAGAAACTCCAGAAAGATAATGAATTTCTTACAGAGCGCTTATTGACAATGGAAGAAGAAACAAAGATGCTGAAAGAAGCTTTGGCAAAACGAAACAGTGAATTGCAGGCTTCAAGGAGTATGTGTGCTAAAACACTTAGCAAACTTCAAACTTTGGAAGCACAAGTTCAGCCAAGTATTCATCAGAAGGGATCTCCAACATCTACCACTCATATGAACCATGAAAGCATTTACAGCCAAAATACAGGCTATGCACCAAGCATGATCTGCATATCGGAAGATGGCAATGATGATGCAAGAAGTTGTGCTGAGTCTTGGTCTACGGCATTAATCTCTGAGCTATCCCAATTCACAAAGGAAAAGAATGCCGATGAATTGGGAAAATCTGAAGAGACTGAGAAGTTGGAACTGATGGATGACTTCCTAGAGGTCGAGAAATTTGCTGGATTATCGAACGATTCTATTGAAGATGCTTCTACGTCATTCACATCAAACAATAACAAGGATGAAATCATGACCAATGAAGTATCCAAAGTTGGTACTAGCAAAGATGATCCCTCCGAGTCTGAAAAGAACAGTGATTTAAATCCATTGGCAATTCAAGTGTCCCCTGCTGCAGTATCACCCAGTTCTGGTGGGATAGATGGCTTATCACCAGCAGAACTTCAATCAAGAATACAATCAGTTTTTGAGTCTGTGGCTAAGGATGCTGATGTGGGTCAGATCCTGAAGGATATTAAACATCTTCTTGAAGACGCACGTGTTCTTGAAGACGCACATGATACATCCATCCAAGACTCTGCTGCTGTCACTCCCCACGATGTCCCGCCTTCTGATATTCCATGTGATAAAAAGGATAATTCTGAAGATGCTGGTTCAGTTGCAGAAAAAGAACTCATTTCATCCCAAGAACCTACTCAATATATACAAATAACTTCTGACATAGAAGCTGCAATTTCTCAAATTCATGACTTCGTATTGTTCCTAGACAGAGAAGCAATGACAGTTCATGACATATCTTCTGGTGGTGATGGGATAAGCCAAAAGATGGAGGAATTCTCTGTTACTTACACTAAAGTCAAATGCCATGAAGCAAGTTTGCTGCAGTTTGTTCTTGATCTGTCTCAAGTCTTGGCTAAAACAAGTGAATTCAGATTTAATATCCTTGGTTATAAAGGTATGGAAGCTGAAACTAACAGTCCTGATTGCATAGATAAGATTGCTCTGCCTGAAAATAAGTTAGTTCAAGACACTTCGTCGGAAGAGAGATATCAAAATGGCGATTCCCATATTCTTAATCCCTGTTCTAATCCCGAGGTTCCTGATGATGGAAATTTGACCTCAAGCTATGAATCAAATGCCACATCACAAAAGTTCTCCATGGAGGAATTTGAGGAATTGAAATTAGAGAAAGAGAAGGCAATTGTGGATCTGTCGAAATATTCGGAAAATCTTGAAATGACAAAGTCTCAGTTGCAAGAGACGGAACAACTTCTAGCTGAAGCTAAATCACAACTGGCTTCTGCTCAAAGGTCAAACAGCTTAGGTGAGACTCAACTGAAATGCATGGCAGAGTCATACAGATCACTTGAAACACGTGCACAAGAGTTTGAGACTGAACTCAACCATCTGAGAAAGAAGATAGAAACTCTTGAGAACGAACTTAAAGGTGAAAAGAGATCTCATGAAGCAACTTTGGCAAAGTGCAAGGAGCTAGAAGAACAATTGCAAAGGAATGAGAGTTCAGCTGCTGACAATGAACTTAAGACTAAAAAGGAGAGAGACTTGGCTTCTGCTGCTGAAAAGCTAGCTGAGTGTCAAGAAACAATATATCTTCTTGGCAAGCAGCTAAAAGCTATGCATCCTCCTCAAACAGAACCAGTGGGATCTCCATATGGTGAGAGGCTTTCGAAGGTTGAAGGTTTTGCAGAGCATGAAGTTCAGAGCCCAAATATGCAGGATCTGGAACAAGTTGAGATGGACGGTGCTAGTTTTGCCTTTATGCAAAGACAGGGTGCAGAGTCCCCTTTGCATTTTACTAACAGTTTATATAGTCCATCAGATAATGACTCAAACTTTCAAGCCATATCTCCTTTACCGCCACCAAATCACAAGCCTTCAAAGTCAACCTCTTCCTCAGCTTCTTCCACTCCCACACCAGAGAAACATGGCCGGGGTTTTAGTAGATTCTTTTCATCAAAAGCAAAAGTCGGCCATTAA 3267 0.4092 MDRRWPWKKKSSDKTVLDKVAAELDSAGVSNQENQDVYKKPNYVQISVESYSHLTGLEEQVKSYEEKVETLEDEIAELNEKLSAANTEINTKEGLVKQHAKVAEDAVSGWEKAEAEALALKNHLESVTLSKLTAEDQASQLDGALKECMRQIRNLKEEHELKIQDVVLAKTKQLDKIKGEFEARIRNFEQELLRSAADNAALSRSLQERSNMLVKLSEEKAHAEAEIEHHKSNVESCEREINSLKYELHVISKELEIRNEEKNMSMRSAEAANKQHAEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVESLGRDYGETRLRKSPVKPASSHYSTVPDFSLENIQKLQKDNEFLTERLLTMEEETKMLKEALAKRNSELQASRSMCAKTLSKLQTLEAQVQPSIHQKGSPTSTTHMNHESIYSQNTGYAPSMICISEDGNDDARSCAESWSTALISELSQFTKEKNADELGKSEETEKLELMDDFLEVEKFAGLSNDSIEDASTSFTSNNNKDEIMTNEVSKVGTSKDDPSESEKNSDLNPLAIQVSPAAVSPSSGGIDGLSPAELQSRIQSVFESVAKDADVGQILKDIKHLLEDARVLEDAHDTSIQDSAAVTPHDVPPSDIPCDKKDNSEDAGSVAEKELISSQEPTQYIQITSDIEAAISQIHDFVLFLDREAMTVHDISSGGDGISQKMEEFSVTYTKVKCHEASLLQFVLDLSQVLAKTSEFRFNILGYKGMEAETNSPDCIDKIALPENKLVQDTSSEERYQNGDSHILNPCSNPEVPDDGNLTSSYESNATSQKFSMEEFEELKLEKEKAIVDLSKYSENLEMTKSQLQETEQLLAEAKSQLASAQRSNSLGETQLKCMAESYRSLETRAQEFETELNHLRKKIETLENELKGEKRSHEATLAKCKELEEQLQRNESSAADNELKTKKERDLASAAEKLAECQETIYLLGKQLKAMHPPQTEPVGSPYGERLSKVEGFAEHEVQSPNMQDLEQVEMDGASFAFMQRQGAESPLHFTNSLYSPSDNDSNFQAISPLPPPNHKPSKSTSSSASSTPTPEKHGRGFSRFFSSKAKVGH 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05175 1088 MobiDBLite consensus disorder prediction 1027 1088 - -
Vifa3g05175 1088 Coils Coil 869 958 - -
Vifa3g05175 1088 MobiDBLite consensus disorder prediction 1055 1071 - -
Vifa3g05175 1088 Coils Coil 54 95 - -
Vifa3g05175 1088 Coils Coil 349 376 - -
Vifa3g05175 1088 MobiDBLite consensus disorder prediction 509 529 - -
Vifa3g05175 1088 MobiDBLite consensus disorder prediction 612 641 - -
Vifa3g05175 1088 Coils Coil 813 861 - -
Vifa3g05175 1088 MobiDBLite consensus disorder prediction 1027 1047 - -
Vifa3g05175 1088 MobiDBLite consensus disorder prediction 627 641 - -
Vifa3g05175 1088 SUPERFAMILY Tropomyosin 812 970 - -
Vifa3g05175 1088 Coils Coil 206 289 - -
Vifa3g05175 1088 Coils Coil 138 165 - -
Vifa3g05175 1088 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 1083 - -
Vifa3g05175 1088 MobiDBLite consensus disorder prediction 509 545 - -
Vifa3g05175 1088 Pfam Filament-like plant protein, long coiled-coil 92 976 IPR008587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05175 Vifa-Chr3 1513317219 1513321518 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05175 3 1513317219 1513321518 Vifa3g05175 3 1513317219 1513321518 ECH
Vifa3g05175 3 1513317219 1513321518 Vifa2g04484 2 1316918747 1316922568 PCT