Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05168 ATGGTTTCCTTACAAGAAAAGGTTAAAAGTGTTGGTGTTGGAGTTGGAGTTGGAGTTGGAGTTGGAGGAGGACTTGTTGCTGAGATTAAATTGCTTAAGGAAATGCAACAACATTGTGGGGTGAGAAAGAGTTTGAATTCTGAGTTATGGCATGCTTGTGCTGGTCCTCTTGTGACTTTACCTCATGTGGGAGGTCTTGTTTATTACTTCCCTCAAGGACATAGTGAACAGGTTGCAGCTTCTACTAGAAGAACAGCAACTTCACAGATTCCAAACTATCCTAATCTTCCTTCTCAGTTGTTGTGTCAAATTCAAAATGTCACACTACATGCTGATAAGGAAACGGATGAAATCTATGCTCAAATGACTCTTCAACCATTGAATTCTGATAAAGAAGTGTTTCCTGTATCTGAGTTTGGATTGAGCCAAAGTAAACATCCAACTGAGTTTTTCTGCAAAACTTTGACTGCTAGTGATACTAGCACACATGGTGGCTTTTCGGTTCCGCGCAGAGCTGCTGAGAAGCTGTTTCCTCCACTCGATTACACAATTCAACCTCCAACTCAAGAACTTGTTGTTAGAGATTTGCATGATAATACATGGACGTTTCGACATATATACCGAGGTCAGCCGAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTCGGCTCAAAAAGGCTTAGAGCGGGCGATTCAGTTCTTTTTATCAGGGATGAGAAATCACAATTGCGAGTTGGTGTAAGGCGTGCTAATCGTCAACAGACAACAACATTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGCATCCTTGCTGCTGCAGCTCATGCTGCCGCTAACCGAAGTCCTTTCACGATTTTCTACAATCCGAGGGCATGTCCTTCAGATTTTGTTATTCCACTGGCGAAATACCGAAAAGCTGTTTATGGGACTCAGCTCTCAGTTGGTATGAGATTTGGTATGATGTTTGAGACCGAGGAATCGGGTAAGCGCAGATACATGGGAACGATTATCGGTATCAGTGATGTCGATCCACTAAGGTGGCCTGGTTCTAAGTGGCGAAATATTCAAGCCGAATGGGACGAGCCAGGGTGCGGTGATAAGCAAAATAGAGTTAACGTATGGGAAATTGAGACTCCCGAAAGCCTTTTTATCTTTCCTTCTATGACTTCGAGTCTAAAACGGCCTTTACAATCCGCTTTTTCGGAAAATGAATGGGGAACTTTGATAAGAAGACCTTTTATTAAAGTACCTGAAAACGGAACAATGGATCTCTCAAACTCGATGTCGAATCTCTACCAAGAAAACATGATGAAGATGATGTATAAACCTCAAGTAATCAACAACAATGGAGCATTTTTACCTGTCATGCAACAAGAATATGCTCCTACAGGAGTTCCTTTGCAAGATGTTAAGTCTTCGCATGCGATGGAGAATCCGAAAGTCCATCTTTCAACTACCGAGAGCATACCGAGTAATACCTTAAACATGCATTCATTGTTGAGAAATGATCAACCTGAAAAATTTCACCCTTTGACCAAAACCGAGAAGATGAAAATAGAATCCGAGTCGTTGCCTGATCAAATTTTCGACTTCCCTTCTTTCGAAGCCTGCAACAATGTTGAAAAAGCGAATGCGGTGAATCCTGTTAATTCTCAAAGCCTTGCAAACCAATCAACATACCATAATCAAAATCCATTATTATTCAATCAAACTAGTCCGTGGCCTATTCAGCAGCAGCCTCAGTTAGATTCGTCGATGTTGCATCCTCAATTGATTGATATGGTTCAACCCGATTCTTCCATTGTGAACGGCATGCTTCCTCAGATAGACGTTGACGAATGGATGATGTATTCTTCTTGCCAACCTCAAGTAGTGAATCCCTCTATACCTTCAATGAACCAAGAAGTTTGGGATCATTATGTTAAGAATTTTAACATGAAGGATCTTTCAGATGAAAGCAATAACCAAAGTGAAATTTGTGTCAATGTCGATGTCAGTAATAGTGATAAAGATTTTCAACATCCTCAAGACTGCATGGTCGGAAACTTAAGTTCTAGCCAAGATGGCCAATCTCAGATAACATCCGCAAGTCTAGCTGAGTCGCACGCGTTCTCTCTGCGAGACAACTCAGGCGGCACCTCTTCAAGCCATGTTGATTTCGATGAAAGTAGCTTTTTGCAGAACAATAACTCATGGAAGCAAGTAGCTGCACCGATCCGAACCTACACAAAGGTGCAAAAAGCAGGTTCGGTTGGAAGATCGATCGACGTAACTACGTTCAAGAACTATGGAGAGCTGATTTGCGCAATTGAATGCATGTTTGGACTGGACGGTCTGCTGAATGACACGAAAGGTTCGGGATGGAAACTAGTATATGTAGATTATGAGAGTGATGTTCTACTTGTTGGAGATGACCCTTGGGAGGAATTCGTTGGATGTGTTAGGTGTATAAGAATATTATCACCTACAGAAGTTCAACAGATGAGTGAAGAAGGGATGAAGCTTTTGAACAGTGGAGCATTACAAGGAATCAATGTTTGA 2556 0.4174 MVSLQEKVKSVGVGVGVGVGVGGGLVAEIKLLKEMQQHCGVRKSLNSELWHACAGPLVTLPHVGGLVYYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQIQNVTLHADKETDEIYAQMTLQPLNSDKEVFPVSEFGLSQSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRANRQQTTTLPSSVLSADSMHIGILAAAAHAAANRSPFTIFYNPRACPSDFVIPLAKYRKAVYGTQLSVGMRFGMMFETEESGKRRYMGTIIGISDVDPLRWPGSKWRNIQAEWDEPGCGDKQNRVNVWEIETPESLFIFPSMTSSLKRPLQSAFSENEWGTLIRRPFIKVPENGTMDLSNSMSNLYQENMMKMMYKPQVINNNGAFLPVMQQEYAPTGVPLQDVKSSHAMENPKVHLSTTESIPSNTLNMHSLLRNDQPEKFHPLTKTEKMKIESESLPDQIFDFPSFEACNNVEKANAVNPVNSQSLANQSTYHNQNPLLFNQTSPWPIQQQPQLDSSMLHPQLIDMVQPDSSIVNGMLPQIDVDEWMMYSSCQPQVVNPSIPSMNQEVWDHYVKNFNMKDLSDESNNQSEICVNVDVSNSDKDFQHPQDCMVGNLSSSQDGQSQITSASLAESHAFSLRDNSGGTSSSHVDFDESSFLQNNNSWKQVAAPIRTYTKVQKAGSVGRSIDVTTFKNYGELICAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMKLLNSGALQGINV 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05168 851 SUPERFAMILY CAD & PB1 domains 746 824 - -
Vifa3g05168 851 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
Vifa3g05168 851 Gene3D - 148 252 IPR015300 -
Vifa3g05168 851 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 835 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa3g05168 851 SMART B3_2 151 253 IPR003340 GO:0003677
Vifa3g05168 851 FunFam Auxin response factor 740 834 - -
Vifa3g05168 851 Gene3D - 741 834 - -
Vifa3g05168 851 FunFam Auxin response factor 149 253 - -
Vifa3g05168 851 Gene3D - 316 388 - -
Vifa3g05168 851 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Vifa3g05168 851 Pfam AUX/IAA family 735 831 IPR033389 -
Vifa3g05168 851 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa3g05168 851 SUPERFAMILY DNA-binding pseudobarrel domain 142 281 IPR015300 -
Vifa3g05168 851 CDD B3_DNA 150 251 IPR003340 GO:0003677
Vifa3g05168 851 ProSiteProfiles PB1 domain profile. 745 829 IPR000270 GO:0005515
Vifa3g05168 851 FunFam Auxin response factor 316 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05168 Vifa-Chr3 1508839103 1508843048 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa3g05168 AUX_IAA 8e-10 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05168 3 1508839103 1508843048 Vifa3g05168 3 1508839103 1508843048 ECH