Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05164 ATGGGGGCGGAAATTCCAAAGGATGGATTGAAGGAGAAACTCGACTATCTTTCACTCGTATCCAAGGTATGTACCGAGTTGGAATCTCACACCGGAACCGGCGACAAGGTTCTAGCTGAGTTTATTACCGATTTAGGTCACTCGTCGGAGTCTGTTGAAGAATTTGATTCTAAATTGAAAGAAAACGGCGCCGAGATGCCCGATTATTTCGTTCGAACTCTTCTCACCATCATTCATGCTATTCTTCCTCCTAAACCTAACAAGGAGAAGGAGAATCAGAAGGAGACTGCTACGTCCAAGACTAAGTTTAAGGCGTTGTCGATTTCAGATGATAGGGATCGTGCTAAGGAGCTTAGGAACGAGATTGAAGCCGATGCTAGAGATAAACAGAAGCAGATGGAGCCGGAAAGGTATGAAAAAGGTTGGGATGATGATGATGGTTATAGAGATAGGCGCAGAGATAGAGAGAGATACGATAGAGATGATAAAAGGGATTATAGAAGGGGTAGTGATAGAGAAAGAGGTAGAGACAGAGATGATAGAAGGGGGAATGATAGAGACCGAGATAGGTACGAAAGAGATGATAGAAGGAGGAATGATAGAGATAGAGATAGAGATAGGTATGAAAGAGATGATAAAAGAGGGAATGATAGGGATAAATATGAGAGGAGGAGGAGGGATGGGAATGAGGAGTATGAACATGGAAGGGAGGAGAATATTGATGAGAAAGGTCGTAAAGAAAGAGATTCGAGGCGTGATGATTCTGGTGAACCTGAGCTGTATATGGTTTATAAAGGAAGAATTTCTAGGGTCATGGATACTGGCTGTTTTGTTCAGTTGGATGATTTAAGAGGGAAGGAGGGTTTGGTTCATGTTTCTCAGATGGCTACTAGGAAGATTGTTAATGCTAAGGAAGTTGTTAAAAGGGATCAGCAGGTTTATGTGAAGGTGATTTCTGTTTCTGGTTCGAAGTTAAGTCTTTCCATGAGGGATGTTGATCAGCATACCGGGAAGGATCTTCTTCCGTTGAAGAAGAGCTCAGAGGACGAGGCTTTTAGGACAAATCCACAAGATTCGAAAGATGGGCCGGTGGCTAGGACAGGCCTTTCTGGGATCAGGATTGTGGAGGAGAATGATATTGGTTCTACGCGCAGGCCGCTTAAGAGAATGAGCTCTCCTGAGATATGGGAAGCAAAACAGTTGATTGCTTCAGGGGTTTTGAGTGTTTCGGAGTATCCGACTTATGATGATGAGGGAGATGGAGTCATGTACCAAGAGGAAGGCGCTGAAGAAGAGCTTGAGATTGAGATGAATGACGATGAACCCGCTTTCTTGCAAGGGCAGAGCAGGTACTCAATGGATATGTCTCCGGTAAAAATCTTTAAGAATCCAGAAGGTTCTCTGGGTCGTGCTGCTGCGCTCCAATCCGCGCTTATAAAGGAGCGTAGGGAAGTAAGAGAACAGCAGCAGCGTACCATGCTTGATTCAATTCCAAAGGATCTCAATCGTCCTTGGGAGGACCCTATGCCAGAGTCCGGTGAAAGGCATCTTGCCCAAGAGTTGAGGGGTGTTGGCCTATCGGCCTATGATATGCCAGAATGGAAGAAAGATGCCTATGGGAAAACCATTACTTTTGGCCAAAGGTCAAAGCTTTCTATTCAGGAACAGAGGCAGAGTTTGCCAATTTACAAGTTAAAAAAAGAACTGATTCAAGCTGTCCTAGATAATCAGGTCTTGGTTGTGATTGGTGAAACTGGTTCAGGTAAGACTACGCAGGTCACCCAGTATCTTGCTGAAGCAGGTTATACCACCAGAGGTAAAATTGGATGTACTCAACCCCGTAGAGTGGCTGCAATGTCCGTTGCAAAGAGAGTTGCAGAAGAGTTTGGGTGTAGATTAGGAGAGGAAGTTGGTTATGCCATTCGGTTTGAGGATTGCACCGGACCTGATACTGTAATCAAGTACATGACTGATGGTATGCTTCTTAGGGAAATTTTGGTTGATGAGAATCTGTCACAGTATAGTGTTATAATGCTTGATGAAGCACATGAGAGAACTATTTATACTGATGTTCTTTTCGGACTGCTCAAGCAGCTGGTGAAGCGGAGACCTGAGTTGCGATTGATTGTCACATCTGCTACTCTTGATGCTGAAAAGTTTTCAGGATATTTCTTTAACTGTAACATCTTCACAATTCCTGGGAGAACTTTTCCTGTAGAGATACTCTATACCAAACAGCCCGAAAGCGATTACTTGGATGCATCTCTGATCACTGTTCTACAGATTCACTTGACAGAACCTGAAGGAGACATTCTTCTCTTCTTAACTGGTCAGGAGGAGATTGATTTTGCTTGTCAGTCTCTCTACGAGAGAATGAAGGGATTAGGTAAGAATGTCCCAGAGCTGATCATTTTACCTGTTTATAGTGCCCTTCCTAGTGAAATGCAATCTAGGATATTCGATCCCGCTCCTCCTGGGAAAAGGAAAGTGGTTGTGGCTACAAACATTGCTGAAGCTTCTTTGACTATTGATGGGATATTTTATGTTATTGATCCGGGGTTTGCTAAGCAAAATGTTTATAACCCGAAGCAAGGTCTTGATTCCTTGGTGATAACTCCAATATCACAAGCCTCAGCCAAACAAAGAGCTGGACGTGCAGGGCGTACTGGACCTGGAAAGTGCTATCGCCTCTATACTGAGAGTGCATATAGGAATGAGATGTCACCTACTTCTGTTCCAGAAATTCAAAGGATAAATCTGGGAATGACTACTCTTAGCATGAAAGCCATGGGCATAAATGATCTTCTGTCATTTGATTTTATGGACCCACCATCACCCCAAGCACTTATTTCCGCCATGGAGCAGCTTTACAGTCTTGGAGCATTGGATGAAGAGGGCCTACTAACCAAATTGGGGAGAAAAATGGCTGAATTTCCTCTGGATCCACCACTGTCCAAGATGCTATTTGCCAGTGTTGACCTTGGATGCAGTGATGAGATATTGACCATAATTGCCATGATCCAGACTGGCAACATTTTTTACAGGCCCAGGGAGAAACAGGCTCAAGCAGATCAGAAAAGGGCAAGGTTTTTCCAGCCAGAGGGTGACCATCTTACATTACTTGCTGTTTATGAATCATGGAAAAATAAAAACTTTTCTGGACCCTGGTGTTTTGAGAATTTTGTTCAATCTCGGTCGTTGAGAAGAGCCCAGGATGTTAGGAAACAACTTCTCACCATCATGGATAAGTACAAATTGGATGTTGTGAGTGCTGGAAAAAACTTCACCAAGATTCGGAAGGCTATCACTGCCGGGTTCTTTTTTCATGCCGCTAGAAAGGACCCCCAAGAAGGTTACAGAACACTAGTTGAGAATCAGCCTGTATATATCCATCCAAGTTCAGCTTTGTTCCAGAGGCAGCCAGACTGGGTCATATACCATGAGCTTGTAATGACAACTAAGGAATATATGCGCGAGGTCACAGTCATAGACCCCAAGTGGCTTGTTGAGTTGGCTCCTAGATTCTTTAAAGTGGCAGATCCTACAAAGATGAGCAAACGAAAGCGCCAAGAGCGTATTGAACCACTTTATGATAGATACCACGAGCCAAATTCATGGCGTTTGAGTAAACGCCGTGCATGA 3642 0.4382 MGAEIPKDGLKEKLDYLSLVSKVCTELESHTGTGDKVLAEFITDLGHSSESVEEFDSKLKENGAEMPDYFVRTLLTIIHAILPPKPNKEKENQKETATSKTKFKALSISDDRDRAKELRNEIEADARDKQKQMEPERYEKGWDDDDGYRDRRRDRERYDRDDKRDYRRGSDRERGRDRDDRRGNDRDRDRYERDDRRRNDRDRDRDRYERDDKRGNDRDKYERRRRDGNEEYEHGREENIDEKGRKERDSRRDDSGEPELYMVYKGRISRVMDTGCFVQLDDLRGKEGLVHVSQMATRKIVNAKEVVKRDQQVYVKVISVSGSKLSLSMRDVDQHTGKDLLPLKKSSEDEAFRTNPQDSKDGPVARTGLSGIRIVEENDIGSTRRPLKRMSSPEIWEAKQLIASGVLSVSEYPTYDDEGDGVMYQEEGAEEELEIEMNDDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVLDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIYTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSVPEIQRINLGMTTLSMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLFASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRARFFQPEGDHLTLLAVYESWKNKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05164 1213 Coils Coil 471 491 - -
Vifa3g05164 1213 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 526 735 - -
Vifa3g05164 1213 SMART ultradead3 558 742 IPR014001 -
Vifa3g05164 1213 MobiDBLite consensus disorder prediction 344 368 - -
Vifa3g05164 1213 SMART helicmild6 786 890 IPR001650 -
Vifa3g05164 1213 SMART S1_6 259 330 IPR022967 -
Vifa3g05164 1213 Pfam S1 RNA binding domain 262 323 IPR003029 GO:0003676
Vifa3g05164 1213 Gene3D - 256 341 IPR012340 -
Vifa3g05164 1213 Pfam Helicase associated domain (HA2) 952 1040 IPR007502 GO:0004386
Vifa3g05164 1213 CDD DEXHc_DHX8 555 733 IPR044762 GO:0000398|GO:0003724|GO:0005524
Vifa3g05164 1213 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 675 684 IPR002464 -
Vifa3g05164 1213 Gene3D - 736 910 IPR027417 -
Vifa3g05164 1213 Gene3D - 532 735 IPR027417 -
Vifa3g05164 1213 SMART ha2_5 951 1041 IPR007502 GO:0004386
Vifa3g05164 1213 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1098 1173 IPR011709 -
Vifa3g05164 1213 CDD GH2-like_DHX8 14 81 - -
Vifa3g05164 1213 CDD S1_DHX8_helicase 261 337 - -
Vifa3g05164 1213 MobiDBLite consensus disorder prediction 84 258 - -
Vifa3g05164 1213 Pfam DEAD/DEAH box helicase 566 716 IPR011545 GO:0003676|GO:0005524
Vifa3g05164 1213 PANTHER ATP-DEPENDENT RNA HELICASE 490 1175 - -
Vifa3g05164 1213 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 758 931 IPR001650 -
Vifa3g05164 1213 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 935 1034 - -
Vifa3g05164 1213 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 736 910 - -
Vifa3g05164 1213 CDD SF2_C_RHA 737 898 - -
Vifa3g05164 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 550 1083 IPR027417 -
Vifa3g05164 1213 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 570 733 IPR014001 -
Vifa3g05164 1213 Pfam Helicase conserved C-terminal domain 760 890 IPR001650 -
Vifa3g05164 1213 ProSiteProfiles S1 domain profile. 261 330 IPR003029 GO:0003676
Vifa3g05164 1213 MobiDBLite consensus disorder prediction 105 258 - -
Vifa3g05164 1213 SUPERFAMILY Nucleic acid-binding proteins 259 333 IPR012340 -
Vifa3g05164 1213 Gene3D - 935 1033 - -
Vifa3g05164 1213 FunFam ATP-dependent RNA helicase DHX8 256 341 - -
Vifa3g05164 1213 Coils Coil 108 132 - -
Vifa3g05164 1213 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05164 Vifa-Chr3 1507216666 1507220617 Proximal