Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05146 ATGGATAACGAAGATTTGAGGCCAGGGACGAAAAAGAAGAAGAGATCCAAACCGATTGAAATTGGTTTTGATTCGGATAACGATAAGCCAATTGGATCGTTTTTGAAGTTGAAGAGGAATAAGAAGAAGGTTAGTTTTGCATCAGGGGGTTCTTGTGGTGGAGATTCTGTTAAGGAAAATGAGAATTCTAGGGTTATGGATGATAATGATACCTTGGCTACCTTTAGAAAAAGGTTGAAGGGTCCAAAGAGAGATCAGGGATATGGTTTGAATGTTTCTAATGAGGGTGATGGTTTGGGAAGTGGCGGATCTGGGAAAGGTGATGATAACATGCAGCTGCGTCATGATCATGATTCTGGTCAGCATATGGAAGAATCCTTGTCTACGATTTTCCACAAGGCGCAGTTTAGTTCTGTTAGGAAATCCCGTGGAGCGTTAGGTTCAAAGCAGAAAAAACGGAATCGGAGTGTGGATAGTGGGTTGAAACATGGTTCCCGGAGTTTAACAGAAAATGTAGATTATGTGGTTGAAAGTAGATCTGGATCTGCTTTTACCTTGAAATCGGTTGAGAGAAATCATGAGTCTGATACGTTTTGTTCAGTATCTGCGATGGAGAATCAACAGGGTAGTGGTGACTGTTTGCAAGATGAAAAGGCCAAGGGTATTTGTGATTCAAACATTCCTGATGAACCGTCGGTTGATCACTCTAACTCGATCATTGCCTGCGATGGTGATAGACAGCTATTGTCAATTGTACAAGTTGTAAATGTTTGTGGTGCTTCTGACGAAAAGGTTACATTGCAAGAAAAAATTATCGATAATAGTTTGAATCGGTGTTCTTCCATGTTACAAGATGTTGAAATAATTGATATCGACTCTCTCTCTAAAGTGGGGGAAGGGGTGTGTGGACTTTCTGAGACAGCAGAGCTTGAGAATAATAGATCAACTGATGAAATAGCAGAAGAACAGGTGCGTAATGGTGCTTCAGAAGGAGGTGTTTCTTCTTCCGCAGAGAAAGAAGTTTTGTTAACTTGTCACACCGAGCTCTTGATAAAATTAAATGAAAATAATCCCATGGTTTCTGGAAAAAGGTTCCAGGAATCTTCAATCAATGGAGGCTGCTCATCTGAAAAACATGAAGCAATTGCCAGTGGTAGTTTATCCTCTGTTTTGCCTAACGATGCCAATGAATCTGAATTGATTGTCCAGTCAAATCACCCGGACAAACCTTTGGAAATGTGTAATATTCCAAAATACTCTAATGCACCCATTCTGAAGTGCAGCTATGCGTTAGATCCAAATCAATCTGATGGATCCTCTATACAATCTTCAATTCCAGATGAAAATGGAAACACTGCAGAATATCACGTCTCTGTGTCTGATTTTGCTGACAATGGTGGTAAGATATCTAGCATTCCTCGGGCAACACGAAAGACCAAAATGAATAAGCACGGCGACATGACTTATGAGGGGGATGCTGATTGGGAGATTTTAATAAATGATAAAGCCCTAATTGGAAGCCAAGATGCTGCAGACGGTGAACACACTCTTAGAACAAGAGTAAAGCAGGATTCCTCTTTGAATGCTGTTGAGGACTCTGAAAGTGTTGCAGTAGCGGCAGTATCTGCTGGGCTGAAAGCTCGTGCAGTCGGTCCAATTGAGAAAATAAAATTTAAGGAGATCTTGAAGCGTAAAGGTGGTCTCAAGGAATATTTAGATTGCAGGAATAAGATCTTAAGCCTATGGAGCAGTGATGTCACACGTATTTTACCTCTTGCTGAATGTGGAGTTAGTGATACCCATTCTGAGAATGAAAGTCCTCGTTCTTCTCTTATTAGGGAGGTCTATGCATTTCTTGATCAATATGGTTATATAAATGTTGGAGTTGCCTCTCAAAAGGAGAATGTTGAGAGCTGTGCAAGACATTGTTACAAACTTGTAAAAGAAAAAGGATTCGAGGAAAATCCTACAGCTTCATTGGCCGGCTCTGAAGATGGAGTTTCATTTAATGTTGGTCAGACTAAGATGTCATATGCTTCTATGGACATTAACAATGATCTAATAAAGGATTTTGAAGACCTGACAACTGAGGCTGCAGAGGGCATGATGCATGTTGACGAAGTGATGAGAGATTCATCAAACATGGCACAACATGAAAGAAAAAATTATGATGACCAGGAAAATGTCGGGATTCAGGATGGAGTCAATGGAATTCTACATTTCAATGATGACAGTGCTGTCCCTTCTTTTAACTTTCCTGATTGCAGATTGACTTCTCTTGTTGCTACAAAACAAAACAGTGAATCTAAATGTGTTAAACATGCATTAGGGGATCAGATAGGTGATACTCTGCAGTCTGATTTAGAAGCTAGAAAGAGAGTGATTATAATTGGAGCTGGTCCTGCTGGGCTAACTGCTGCTCGCCACTTGAATCGCCAGGGGTTTACTGTAACTGTGCTTGAGGCTAGGAATAGGATAGGAGGTCGGGTATTTACAGATCACTCGTCTCTTTCTGTCCCTGTGGATCTTGGTGCTAGCATTATCACGGGTGTTGAGGCTGATGTGGCCACTGAGAGAAGACCAGATCCTTCCTCCTTGGTTTGTGCTCAGCTGGGCCTCGAATTGTCAATGTTAAACAGTGACTGCCCTCTTTATGACACAGTGACTGGTCAAAAAGTTCCTTCAGAAATGGATGAATCACTGGAAGCTGAATACAACAGTCTTCTTGATGACATGGTACTGGTTGTTGCTCGGAAAGGTGAACAAGCAATGAAAATGTCTCTTGAAGATGGTTTAGAATACGCCCTTAAGATTCGCCGCATGGGACTTTCTGAAGGTAGTGAAGAAACTAAGCAAAATTTTGATGAGGAGATTTTGGATCCTCAGGAGAGGAGGGTTATGGATTGGCACTTTGCTCATTTGGAGTATGGCTGTGCTGCTTTGCTTAAAGAAGTTTCTCTTCCCTATTGGAATCAAGACGACGTGTATGGAGGATTTGGAGGACCTCATTGTATGATCAAAGGAGGTTATAGCACTGTTGTTGAGTCTCTTGGAGAAGGGCTTGCTATTCACATGAACCACACTGTCACAAATGTGTCATATGGTATCAAAGAACCTGGCCAGAATAATAAAGTCAAAGTTTCTACATTGAATGGCAATGAGTTTTTTGGAGATGCTGTCCTCATTACTGTCCCACTTGGCTGTTTGAAAGCTGAAACCATACAGTTCTCCCCCTCTTTGCCGGAGTGGAAATGTTCTTCCATTCAGCGTCTTGGCTTTGGAGTTCTCAATAAAGTGGTTTTGGAATTTCCTACTGTGTTTTGGGATGATGCGGTGGACTACTTTGGAGCAACAGCTGAGGATAGAAGCAAAAGAGGTCACTGCTTTATGTTCTGGAATGTCAAGAAAACTGTTGGGGCTCCTGTCCTCATAGCATTAGTGGTTGGTAAGGCAGCCATTGACGGTCAAAGTTTAAGCTCTTTTGATCATGTCAACCATGCATTGAAGGTTCTTCGGAAACTTTTTGGGGAGGCTTCAGTTCCTGATCCTGTGGGATATGTTGTGACTGATTGGGGTAGGGATCCCTATAGCTTTGGTGCTTACTCTTATGTTGCTGTTGGAGCATCAGGAGAAGACTACGATATCTTAGGAAGACCAGTTGATAACTGCTTGTTTTTTGCTGGTGAAGCAACCTGCAAAGAACACCCTGACACTGTTGGTGGTGCAATGATGAGTGGACTACGGGAGGCTGTTCGCATAATTGACATATTGAACACAGGAAATGACAATACTGCAGAGTTAGAGGCATTGGAAGCTGCACAGGGACAGTTGGACACCGAAAGGAATGAAGTTAGGGACATAATAAAGAGACTTGATGCAGTTGAGCTTTCTAACATACTATATAAGAACTCTTTTGAGGGTGCTCAAATCATAACCCGAGAAGCTTTATTAAAGGAAATGTTTCTCAATGTGAAAACCAATGCTGGGCGATTGCATGTGGCCAAACAATTGCTAAGTCTTCCTGTTGGAAACTTGAAGTCCATTGCTGGAAGTAAGGAGGGGCTAACTGTCCTCAACTCCTGGATACTGGACTCAATGGGAAAAGATGGCACCCAACTCTTGAGGCATTGTTTGCGTCTTCTTGTGCGCGTGTCCACTGATCTAGGTGCTGTACGCTTATCAGGAATGGGGAAAACAGTGAAGGAAAAAGTTTGTGTACACACTAGCCGTGATATTCGAGCTATAGCTAGCCAATTGGTCAATGTATGGCTTGAAATTTTCCGCAAGGAAAAAGCTTCTAATGGGGGATTAAAGTTGTCAAGGCAAATAACTACTCTAGAATTATCAAAGAGAAAATCTTTAAAAGATTCAGCCTCAGGGAAGCCTCCTCTAAGCATACATCAGAGTGCCGTAGAGAATAAAGAAGGCTTGCTGAATCCTGTATCTGCTGGAAGCAATTCACCTTCAACCACACATGCGAGGAAATGGCACAGCAAACAAGGAAGACAACAATCAGCATGTGACTCAAGGCATGAAGTCAGTTCTTCCAGGTCTCAAGGTTCAATAGACAAAATAGACACTAAGCAGGAAAATAAACGCTATGCCATGTCTGAAGAAGAAAAGGCTGCTATAGCTGCTGCAGAAGCTGCCCGTACTAAAGCAATTGCTGCTGCTGAGGCATATGCCTCTGCAGAAGCTAGGTGCAGTACACTGTCACAGCTTCCGAAGATACCCTCATTCCATAAATTTGCTAGACGAGAGCAGTATTCACAAAATGATGAGATTGATAGTAGAAAAAAGTTACCCGGTGGTTTGTTCGGAAGGCAAGATTGTGTTTCCGAGATCGATTCTAGGAATTGCAGAAGGAGTCATTCAAATGAGATTGCCAGCCATTTGAATTTCGGAGAGCGCTCAGGAGAAAGTGCTGCTGTGGACAGTAATCTATATACAAAAGCTTGGATTGACACAGCTGGTGATGGGGTAGTAAAAGATCATCTTGCCATAGAGAGATGGCAATCTCAAGCAGCTGAAGCTGATTCTTATTTTTCTGATCAAATCAATCATTTGAAGGATGAGGAGGATTCAAATGCCTATTCAAGGTTACCCAGATGGAAACATGATGGTGTAGTAAATGAGAGTTCTGTTTCCCAGGTTACTGTAAATAAGGAAGAGGCCTTCAAAGGCCATTCTCGAGGAGCAGATCATATTAAACAGGCTGTTGTTGACTATGTTGGATCACTACTTATGCCCCTTTATAAGGCTAGGAAACTAGACAAGGATGGATACAAGGCAATAATGAAGAAAAGTGCAACAAAGGTCATGGAGCAAGCAACGGATGCAGAAAAAGGCATGACTGTTCGTGAGTTTCTAGACTTTAAGCGAAGGAATAAGATTCGCTCGTTTGTGGATATATTGATTGAGAGACATATGGCAACAAAACCGGGTACAAAATCATAA 5457 0.4195 MDNEDLRPGTKKKKRSKPIEIGFDSDNDKPIGSFLKLKRNKKKVSFASGGSCGGDSVKENENSRVMDDNDTLATFRKRLKGPKRDQGYGLNVSNEGDGLGSGGSGKGDDNMQLRHDHDSGQHMEESLSTIFHKAQFSSVRKSRGALGSKQKKRNRSVDSGLKHGSRSLTENVDYVVESRSGSAFTLKSVERNHESDTFCSVSAMENQQGSGDCLQDEKAKGICDSNIPDEPSVDHSNSIIACDGDRQLLSIVQVVNVCGASDEKVTLQEKIIDNSLNRCSSMLQDVEIIDIDSLSKVGEGVCGLSETAELENNRSTDEIAEEQVRNGASEGGVSSSAEKEVLLTCHTELLIKLNENNPMVSGKRFQESSINGGCSSEKHEAIASGSLSSVLPNDANESELIVQSNHPDKPLEMCNIPKYSNAPILKCSYALDPNQSDGSSIQSSIPDENGNTAEYHVSVSDFADNGGKISSIPRATRKTKMNKHGDMTYEGDADWEILINDKALIGSQDAADGEHTLRTRVKQDSSLNAVEDSESVAVAAVSAGLKARAVGPIEKIKFKEILKRKGGLKEYLDCRNKILSLWSSDVTRILPLAECGVSDTHSENESPRSSLIREVYAFLDQYGYINVGVASQKENVESCARHCYKLVKEKGFEENPTASLAGSEDGVSFNVGQTKMSYASMDINNDLIKDFEDLTTEAAEGMMHVDEVMRDSSNMAQHERKNYDDQENVGIQDGVNGILHFNDDSAVPSFNFPDCRLTSLVATKQNSESKCVKHALGDQIGDTLQSDLEARKRVIIIGAGPAGLTAARHLNRQGFTVTVLEARNRIGGRVFTDHSSLSVPVDLGASIITGVEADVATERRPDPSSLVCAQLGLELSMLNSDCPLYDTVTGQKVPSEMDESLEAEYNSLLDDMVLVVARKGEQAMKMSLEDGLEYALKIRRMGLSEGSEETKQNFDEEILDPQERRVMDWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFGGPHCMIKGGYSTVVESLGEGLAIHMNHTVTNVSYGIKEPGQNNKVKVSTLNGNEFFGDAVLITVPLGCLKAETIQFSPSLPEWKCSSIQRLGFGVLNKVVLEFPTVFWDDAVDYFGATAEDRSKRGHCFMFWNVKKTVGAPVLIALVVGKAAIDGQSLSSFDHVNHALKVLRKLFGEASVPDPVGYVVTDWGRDPYSFGAYSYVAVGASGEDYDILGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGNDNTAELEALEAAQGQLDTERNEVRDIIKRLDAVELSNILYKNSFEGAQIITREALLKEMFLNVKTNAGRLHVAKQLLSLPVGNLKSIAGSKEGLTVLNSWILDSMGKDGTQLLRHCLRLLVRVSTDLGAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLEIFRKEKASNGGLKLSRQITTLELSKRKSLKDSASGKPPLSIHQSAVENKEGLLNPVSAGSNSPSTTHARKWHSKQGRQQSACDSRHEVSSSRSQGSIDKIDTKQENKRYAMSEEEKAAIAAAEAARTKAIAAAEAYASAEARCSTLSQLPKIPSFHKFARREQYSQNDEIDSRKKLPGGLFGRQDCVSEIDSRNCRRSHSNEIASHLNFGERSGESAAVDSNLYTKAWIDTAGDGVVKDHLAIERWQSQAAEADSYFSDQINHLKDEEDSNAYSRLPRWKHDGVVNESSVSQVTVNKEEAFKGHSRGADHIKQAVVDYVGSLLMPLYKARKLDKDGYKAIMKKSATKVMEQATDAEKGMTVREFLDFKRRNKIRSFVDILIERHMATKPGTKS 1818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05146 1818 PRINTS Adrenodoxin reductase family signature 793 815 - -
Vifa3g05146 1818 PRINTS Adrenodoxin reductase family signature 816 829 - -
Vifa3g05146 1818 Gene3D - 535 640 IPR036388 -
Vifa3g05146 1818 MobiDBLite consensus disorder prediction 313 333 - -
Vifa3g05146 1818 SUPERFAMILY Homeodomain-like 534 631 IPR009057 -
Vifa3g05146 1818 MobiDBLite consensus disorder prediction 1478 1534 - -
Vifa3g05146 1818 MobiDBLite consensus disorder prediction 109 123 - -
Vifa3g05146 1818 Pfam SWIRM domain 546 626 IPR007526 GO:0005515
Vifa3g05146 1818 MobiDBLite consensus disorder prediction 1 32 - -
Vifa3g05146 1818 ProSiteProfiles SWIRM domain profile. 536 636 IPR007526 GO:0005515
Vifa3g05146 1818 MobiDBLite consensus disorder prediction 139 164 - -
Vifa3g05146 1818 Gene3D - 881 1209 - -
Vifa3g05146 1818 Gene3D - 794 1252 IPR036188 -
Vifa3g05146 1818 Pfam Flavin containing amine oxidoreductase 802 1254 IPR002937 GO:0016491
Vifa3g05146 1818 MobiDBLite consensus disorder prediction 1 24 - -
Vifa3g05146 1818 MobiDBLite consensus disorder prediction 60 84 - -
Vifa3g05146 1818 Coils Coil 1270 1290 - -
Vifa3g05146 1818 FunFam Lysine-specific histone demethylase 1A 535 638 - -
Vifa3g05146 1818 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1352 1436 IPR035441 -
Vifa3g05146 1818 PANTHER FLAVIN MONOAMINE OXIDASE 792 1261 - -
Vifa3g05146 1818 MobiDBLite consensus disorder prediction 44 124 - -
Vifa3g05146 1818 MobiDBLite consensus disorder prediction 1479 1522 - -
Vifa3g05146 1818 SUPERFAMILY FAD/NAD(P)-binding domain 791 1257 IPR036188 -
Vifa3g05146 1818 SUPERFAMILY FAD-linked reductases, C-terminal domain 1092 1203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05146 Vifa-Chr3 1502004915 1502013574 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Vifa3g05146 Amino_oxidase 6.4e-104 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05146 3 1502004915 1502013574 Vifa3g05146 3 1502004915 1502013574 ECH