Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05138 ATGAAGATCCAATGCGACGTTTGTAACAAAAACGAAGCTTCATTATTCTGCACCGCCGATGAAGCCGCCTTATGCAACGACTGCGACCACCGTGTCCACCACGCCAACAAGCTAGCCTCCAAACACCACCGTCTCTCTCTTCACACTCCTTCTCCTAATCAACACCCTCTCTGTGATATCTGTCAGGAGAGAAGAGCTTTTGTGTTGTGTAAACAAGATAGAGCTATTCTCTGTAAAGACTGTGATTCATCTATTCATTCTGTTAACGAACTGACTCAGAAACATGATAGTACTATTTCACAAAACGTAGCTGTGGAAGAAGGAGAAGAAGGATGTGGTGGTTCAAGTATTTCTAAGTACTTGATTGAGACTCTACCTGGTTGGCAAGTTGATGATTTTCTAGATTCTTCTTCTGTTCCCTTTGCTTTCTCTAAGGGTGATGAATTGTTTGAAGAAAATCTTGATTCATTTTTTCCCAATAGTAACATTGGGATCTGGGTTCCTCAAGCACCACCACCATCTCTATATTCTTCTTCACAGATGATGATGATGGGTCAGAGTGAGACCAAGAAAAACAGCAACATCAACATCAACAGATCAAGGTTGAGGGATGATGGTAACATTTTCACAGTTCCACAGATTAGTCCTGCTTTCAGTTCCAAGAGAACAAGATATCTATGGTAG 684 0.4152 MKIQCDVCNKNEASLFCTADEAALCNDCDHRVHHANKLASKHHRLSLHTPSPNQHPLCDICQERRAFVLCKQDRAILCKDCDSSIHSVNELTQKHDSTISQNVAVEEGEEGCGGSSISKYLIETLPGWQVDDFLDSSSVPFAFSKGDELFEENLDSFFPNSNIGIWVPQAPPPSLYSSSQMMMMGQSETKKNSNININRSRLRDDGNIFTVPQISPAFSSKRTRYLW 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05138 227 FunFam B-box zinc finger protein 21 1 98 - -
Vifa3g05138 227 PANTHER B-BOX ZINC FINGER PROTEIN 22 108 219 - -
Vifa3g05138 227 CDD Bbox1_BBX-like 5 47 - -
Vifa3g05138 227 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Vifa3g05138 227 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Vifa3g05138 227 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vifa3g05138 227 CDD Bbox1_BBX-like 57 96 - -
Vifa3g05138 227 Gene3D Classic Zinc Finger 1 96 - -
Vifa3g05138 227 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vifa3g05138 227 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vifa3g05138 227 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05138 Vifa-Chr3 1500188464 1500189759 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vifa3g05138 zf-B_box 3.2e-05 No_clan