Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05136 ATGGCTGGTTTCTTCTCTCTAAGCAGTGGAAGAGGAAAAGAAGAAGCTAGAGAACAAGAAGAAAATAATAACAGTGGAAACACTAACAATAATCAGTTTCTCTTCAGAAACGAAGAGATCTACAACAACAAAGGATTCGAGATATGGCCACAAGCACATCAATCTTCTTTTCATCATCAACAAAATCTTAACAACTTTTACTCTTTCGGTGTTGGAGGTAGTACTAGTCGAAGAAACGAAAACAATTTAAACGACGACGTTTCCGTTTCGTTTTCTGATGAATCAACTAGATTTGGATTAACAGTGATGAGGTCTTCCGGTGGTGGTTTAAGCGGCGGCGGAATGAACTGTCAAGATTGCGGTAACCAAGCGAAGAAAGACTGTCCTCATCTTAGATGCAGAACTTGTTGTAAGAGCCGAGGGTTTCAGTGTCAAACTCATGTTAAAAGTACTTGGGTTCCAGCCGCGAAACGCCGCGAACGGCAGCATCAGCTTTCATCTTTGCAGCAACAAAATCAACACCAACACCAACACCAGCAACAACAACAGCAACAGTTTCATTCCTCACGACGACACAGAGAAAATCCAAACGACTCTTCTGCAGCGGGAGCTTCTGGTTCTCTTGCTTGTACTCCAATACCTATCACTTCAACAGGGTTGGAGCTGGGTAATTTTCCACCGGAACTGAATTCACCGGCGGTGTTCCGGTGTGTGAAAGTGAGTGCAATGGATGCACAAGACGAGCGTTACGCTTATCAAACTGCTGTGAACATAGGAGGACGTGTTTTCAAGGGAATTCTCTATGATCAAGGACTTGAAGTTAATTACACTAGTGCAAATGCTGGTGGAGGTGTTGGAGGTTCTTCTGGCGGTGGCGGCGAGGGTTCTACTGGCGGTGGCGGCGGTGATGGAAATCAACAGAATCTGATAACAACCACCACAACAAATGTTAACAATCCATTTGAATACTCATCTCTTTATCCAGCACCTCTTAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCTCCAAGATCCTAA 1041 0.4419 MAGFFSLSSGRGKEEAREQEENNNSGNTNNNQFLFRNEEIYNNKGFEIWPQAHQSSFHHQQNLNNFYSFGVGGSTSRRNENNLNDDVSVSFSDESTRFGLTVMRSSGGGLSGGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQHQLSSLQQQNQHQHQHQQQQQQQFHSSRRHRENPNDSSAAGASGSLACTPIPITSTGLELGNFPPELNSPAVFRCVKVSAMDAQDERYAYQTAVNIGGRVFKGILYDQGLEVNYTSANAGGGVGGSSGGGGEGSTGGGGGDGNQQNLITTTTTNVNNPFEYSSLYPAPLNAFMAGTQFFPPPRS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05136 346 Pfam Domain of unknown function (DUF702) 114 273 - -
Vifa3g05136 346 NCBIfam LRP1 C-terminal domain 225 272 IPR006511 -
Vifa3g05136 346 NCBIfam putative zinc finger domain, LRP1 type 116 158 IPR006510 -
Vifa3g05136 346 MobiDBLite consensus disorder prediction 1 33 - -
Vifa3g05136 346 MobiDBLite consensus disorder prediction 287 309 - -
Vifa3g05136 346 MobiDBLite consensus disorder prediction 157 208 - -
Vifa3g05136 346 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 332 IPR007818 GO:0003700|GO:0006355
Vifa3g05136 346 MobiDBLite consensus disorder prediction 165 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05136 Vifa-Chr3 1497082278 1497083740 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vifa3g05136 DUF702 6.9e-65 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05136 3 1497082278 1497083740 Vifa2g04461 2 1308201137 1308202335 PCT