Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05135 ATGGACCGCCGTTTCATCTTCGCCATCTTCCTCTTCGCTGCCGTAGCAACCTCCTCCACCGACGACACCAACACCGACGACTTCATAATCCGTCAAGTCGTCGACAACGAAGAAGACCATTTACTAAACGCCGAACATCACTTCACTTCCTTCAAGTCAAAGTTCAGCAAAAGCTACTCGACAAAAGAAGAACACGATTACCGATTCGGCGTGTTCAAGTCGAATCTCATCAAAGCGAAGCTCCACCAGAAGCTCGATCCAACAGCGGAGCACGGGATAACTAAATTCTCCGATTTAACGGCGTCTGAGTTTCGCCGTCAGTTTCTCGGACTCAAGAAACGTCTCCGTTTGCCAGCTCATGCTCAGAAGGCTCCGATCCTTCCTACCACCAACCTCCCAGAGGATTTTGATTGGCGTGAGAAAGGCGCCGTTACTCCCGTCAAGGATCAGGGTTCATGCGGCTCATGTTGGGCGTTTAGCACAACTGGAGCTTTAGAAGGAGCACACTATCTGGCTACTGGGAAACTAGTTAGCCTTAGCGAACAACAGCTCGTGGATTGCGATCATGTGTGTGACCCAGAGCAAGCTGGATCATGTGACTCGGGCTGTAATGGTGGATTGATGAACAATGCATTTGAATATTTACTCCAGTCTGGGGGAGTAGTGCAAGAAAAGGACTATGCTTACACAGGAAGAGATGGCTCCTGCAAATTTGACAAAAGCAAAGTTGTTGCTTCCGTCTCTAATTTCAGTGTGGTTTCCTTAGACGAAGAACAAATTGCTGCAAATCTAGTAAAGAATGGCCCTCTTGCAGTTGGTATTAATGCAGCCTGGATGCAGACATACATGAGTGGCGTTTCATGCCCATACGTATGTGCAAAATCACGTTTGGATCATGGTGTTCTTCTAGTTGGTTTTGGAAAAGGTGCTTATGCTCCCATTCGATTGAAGGAAAAGCCTTACTGGATCGTTAAGAACTCTTGGGGGCAGAATTGGGGAGAGCAGGGATACTACAAGATCTGCAGAGGTAGAAATGTATGTGGTGTCGACTCGATGGTTTCAACTGTAGCTGCAGCTCAATCCAACAATTAA 1092 0.4734 MDRRFIFAIFLFAAVATSSTDDTNTDDFIIRQVVDNEEDHLLNAEHHFTSFKSKFSKSYSTKEEHDYRFGVFKSNLIKAKLHQKLDPTAEHGITKFSDLTASEFRRQFLGLKKRLRLPAHAQKAPILPTTNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALEGAHYLATGKLVSLSEQQLVDCDHVCDPEQAGSCDSGCNGGLMNNAFEYLLQSGGVVQEKDYAYTGRDGSCKFDKSKVVASVSNFSVVSLDEEQIAANLVKNGPLAVGINAAWMQTYMSGVSCPYVCAKSRLDHGVLLVGFGKGAYAPIRLKEKPYWIVKNSWGQNWGEQGYYKICRGRNVCGVDSMVSTVAAAQSNN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05135 363 Pfam Papain family cysteine protease 132 355 IPR000668 GO:0006508|GO:0008234
Vifa3g05135 363 SUPERFAMILY Cysteine proteinases 44 355 IPR038765 -
Vifa3g05135 363 SMART Inhibitor_I29_2 48 104 IPR013201 -
Vifa3g05135 363 CDD Peptidase_C1A 133 356 IPR039417 -
Vifa3g05135 363 FunFam Cysteine protease RD19A 28 357 - -
Vifa3g05135 363 Pfam Cathepsin propeptide inhibitor domain (I29) 48 104 IPR013201 -
Vifa3g05135 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 150 161 IPR000169 -
Vifa3g05135 363 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 43 350 IPR013128 GO:0008234
Vifa3g05135 363 Gene3D Cysteine proteinases 17 357 - -
Vifa3g05135 363 SMART pept_c1 132 357 IPR000668 GO:0006508|GO:0008234
Vifa3g05135 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 321 340 IPR025661 -
Vifa3g05135 363 PRINTS Papain cysteine protease (C1) family signature 321 327 IPR000668 GO:0006508|GO:0008234
Vifa3g05135 363 PRINTS Papain cysteine protease (C1) family signature 150 165 IPR000668 GO:0006508|GO:0008234
Vifa3g05135 363 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Vifa3g05135 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05135 Vifa-Chr3 1495815255 1495817405 Dispersed/Transposed