LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g05131	ATGATGAAATCAGAGGTGAGAAGTGAAGAGAGAAAACAGTTGAAAAAACCAGCACAAGCAAGTTCAAGAAAAGGCTGCATGCGAGGCAAGGGTGGACCTGAAAATGCAAGCTGCACTTACAAAGGTGTGAGACAGAGAACCTGGGGCAAATGGGTGGCTGAAATCCGCGAACCTAACCGCGGAGCTCGTCTTTGGCTCGGTACTTTTGAAACTTCTCATGACGCTGCTTTAGCTTATGATGCTGCTGCTCGTAAGCTGTATGGTTCCGAAGCAAAACTCAATCTTCCAGACCTTTCTCCTCATTCTGCATCCTCTGAGACAATATCACAAACACCTCAAATGCAACATCAACAAATTCAAGTTCAAGCCAATCTCAACAACAACAACAGCTTCAATATTTCAAACATCAATTCATGCAACATGAACAACATGAGCAACATGAGCAACATGAACAACATGAGCAACAATAACATTAACAATAGCATCAAGAGCACTGTTTTTGTTGGTGATATTGGACCAATATATAACAGTGATAATTCTGTTGTGCCATTTCCAATGGATATTCCAAACACAATGGAACAACAAGTTGTTGATCAAAGCTACAACAATATTAACAACCCAAAGGGTATTATGGAGAATAATGATTCATTTTTTGGAACAATGAATTATGAAACCACCATGCCAGTGGTTGATGATGATTCAATCTGGAGAGAAGCTGCTATGTCTCTGGATGCTGCAATTTCAATGGATTATCCAATGATCAGTGATCCTGAAGGAATATATAATTCTGGTGGAAGTTTCGGTGGTTGGGATTCTCTACAAACACCCTGGTGCATGTAA	840	0.4036	MMKSEVRSEERKQLKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHDAALAYDAAARKLYGSEAKLNLPDLSPHSASSETISQTPQMQHQQIQVQANLNNNNSFNISNINSCNMNNMSNMSNMNNMSNNNINNSIKSTVFVGDIGPIYNSDNSVVPFPMDIPNTMEQQVVDQSYNNINNPKGIMENNDSFFGTMNYETTMPVVDDDSIWREAAMSLDAAISMDYPMISDPEGIYNSGGSFGGWDSLQTPWCM	279

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g05131	279	PRINTS	Ethylene responsive element binding protein signature	62	78	IPR001471	GO:0003700\|GO:0006355
	Vifa3g05131	279	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355
	Vifa3g05131	279	Gene3D	AP2/ERF domain	39	97	IPR036955	GO:0003700\|GO:0006355
	Vifa3g05131	279	MobiDBLite	consensus disorder prediction	1	17	-	-
	Vifa3g05131	279	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	12	176	-	-
	Vifa3g05131	279	MobiDBLite	consensus disorder prediction	1	38	-	-
	Vifa3g05131	279	FunFam	Ethylene-responsive transcription factor 2	38	97	-	-
	Vifa3g05131	279	Pfam	AP2 domain	39	88	IPR001471	GO:0003700\|GO:0006355
	Vifa3g05131	279	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355
	Vifa3g05131	279	CDD	AP2	38	98	IPR001471	GO:0003700\|GO:0006355
	Vifa3g05131	279	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355
	Vifa3g05131	279	SUPERFAMILY	DNA-binding domain	39	97	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g05131	Vifa-Chr3	1493803279	1493804118	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Vifa3g05131		AP2	4.9e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa3g05131	3	1493803279	1493804118	Vifa3g05131	3	1493803279	1493804118	ECH