Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05125 ATGTATCCGAACCAAGCGTTTTCGTCGGGATCTTATGCTGAGATGATTTCGGGGAACACTTTGTTACCTCATAACTATAGTGAATCTGAAGGAGGACAAAATGAGTTGAAGTTTATCGCATCTATGGACGACTCAATGAATATGCAGTCTATTGGTCAAGGGCATTCGAATGCTGCTACGAGCGATCCAACGACGCAATTTGGACTCGTTGAGAGTGAGCAAAATGTACAATGTCAAGGCTTGTCTCTTAGCCTTGGAACAATGATGCCTTCCTTTCAATATCAGTATCCCGGCAACGGTTTCACCTCGCTAATGAATGCTCAGATTTCGAATTTAAAAGGGTCGGCGTCTCTTAAAGATGACGAGGAATTGAGAAATGCGGAGTGTATTGCATATCATAATTCTGTCAAAAGGGAGGGTTTGTATAATCCGCACTCTTCGATAGGTCTTAACGAAGGTCAATCTGATCAGTGTCTGCACAGATCAGCGATTCTTCCGAACAATGGACTTAATGCACATTACCTTAAGGCGGCACAGGAGTTGCTTGATGAAATAGTTAATGTTCGAAAGACGTTGAAACAAACTGGATTGGAGAAACAACAAAGCTTTCGTGATGCTGGTTTAGACGGTTCCAAAGATTCTGATGGAAAATCTACAAGCCAATCTATGCAAATATCTTCGGGTCCTAATGGTTCTAATGCAAACAACTCTGCGACCGAGCTATCGCCTGCAGAACGACAGCACTTGTTAGACAAGAAAACAAAACTTTTGTCCATGCTGGATGAGGTAGACAAAAGATACCGACAATACTGTCATCAGATGCAGATGGTGGTGTCATCTTTCGACATGGTTGCTGGTTGTGGAGCAGCCGAACCATATACAGCTCTTGCTTTGCGCACAATTTCTCGTCACTTTCGCTGTTTGCGTGATGCTATTAGCGGTCAAATTCAAGTGACTCAAAGGAGCCTCGGAGAACAAGAGGGAATACCTCGTCTCCGGTATGTCGATCAGCAGCTTAGACAACAGAAAGCTCTTCAGCAGCTTGGTGTAATGAGACAGGCTTGGAGACCTCAGAGGGGACTTCCCGAAAGCTCTGTTTCCATACTCCGTGCGTGGCTCTTTGAGCATTTCCTTCATCCTTATCCTAAGGACTCGGAGAAAATTATGCTGGCAAGACAAACAGGCTTGACCCGAAACCAGGTGGCAAATTGGTTCATTAATGCGAGGGTGCGTCTATGGAAACCGATGGTCGAAGAAATGTACAAAGAAGAGTTTGGCGATTCCGAGACAAGTAGCAATCTTTTATCAGAAAACAACACGCCGAAAGCTCCAAGAGAAGATGATCTTCGAGCGTGGGATGATAAAAGAGATGAGTCTCATGACAAGTTAATAACCATTGATAGCGCTCAACAACAAAGTCAAATCGCAGGGTTGAAGCTGGATCATGCATCCTCTTCTGCCACCAGAGCGACAGAATTGGAAAGAGGAATTCAAAGTAATGATCATTGGACGAATGTGATGGATTCTAGAATTGGGAAAATGCAGGGTGATCAACAAAGGTTTAACATGAACAATAGTCCCTATTCGAACGCACCTATCTCGATAAACCAAAATGGTGATGGCTGCTTAATGGATTCAACTCCTACTACTTATGATGACTTATCAGAGTTGAGTAACTTTGCTGTTGGTGGAAATGTCTCACTTGCATTGGAGTTGAGGAACTCGGAAAGTGATGGATTTGGTTTGTCGAATGATGACGTCAATAAAAGGCGTAATCAAACATTGGCTTCTTCGCCGGATAATGATTTGTTAGATTATCATTTCACAGACAGTGGAAAGCAACAACACAACAAGTTTGGCAATCCTCATTTGTTACATGAGTTTGTTGTCTGA 1893 0.4316 MYPNQAFSSGSYAEMISGNTLLPHNYSESEGGQNELKFIASMDDSMNMQSIGQGHSNAATSDPTTQFGLVESEQNVQCQGLSLSLGTMMPSFQYQYPGNGFTSLMNAQISNLKGSASLKDDEELRNAECIAYHNSVKREGLYNPHSSIGLNEGQSDQCLHRSAILPNNGLNAHYLKAAQELLDEIVNVRKTLKQTGLEKQQSFRDAGLDGSKDSDGKSTSQSMQISSGPNGSNANNSATELSPAERQHLLDKKTKLLSMLDEVDKRYRQYCHQMQMVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSETSSNLLSENNTPKAPREDDLRAWDDKRDESHDKLITIDSAQQQSQIAGLKLDHASSSATRATELERGIQSNDHWTNVMDSRIGKMQGDQQRFNMNNSPYSNAPISINQNGDGCLMDSTPTTYDDLSELSNFAVGGNVSLALELRNSESDGFGLSNDDVNKRRNQTLASSPDNDLLDYHFTDSGKQQHNKFGNPHLLHEFVV 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05125 630 SUPERFAMILY Homeodomain-like 356 422 IPR009057 -
Vifa3g05125 630 MobiDBLite consensus disorder prediction 213 241 - -
Vifa3g05125 630 CDD homeodomain 355 416 IPR001356 GO:0003677
Vifa3g05125 630 Pfam Associated with HOX 171 313 IPR006563 -
Vifa3g05125 630 Coils Coil 175 195 - -
Vifa3g05125 630 SMART HOX_1 355 419 IPR001356 GO:0003677
Vifa3g05125 630 ProSiteProfiles 'Homeobox' domain profile. 352 415 IPR001356 GO:0003677
Vifa3g05125 630 MobiDBLite consensus disorder prediction 200 241 - -
Vifa3g05125 630 Gene3D - 352 430 - -
Vifa3g05125 630 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 105 437 - -
Vifa3g05125 630 MobiDBLite consensus disorder prediction 424 452 - -
Vifa3g05125 630 SMART prehox3 159 314 IPR006563 -
Vifa3g05125 630 Pfam Homeobox KN domain 372 411 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05125 Vifa-Chr3 1493080154 1493082650 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vifa3g05125 POX 3.6e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05125 3 1493080154 1493082650 Vifa3g05125 3 1493080154 1493082650 ECH