Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05085 ATGAAAACACTCTACACTTCCTCTTATTCTTCTTCATTACCATTATTACCATCAACAGTTCCATTTCATCATCAGCAACAACACTTTCATCATTTTCGCTCCTTATCCTCATCCACTCTCTCTCTTAACGCTACTCCGCGCGATATCGAACTTCAATTCTCTTCCTCCAACGACACCGTTCAAAACCCTACGATCGAGTTTGAAACACCGCAACACAACGAAGAATCACCTCCTCCAACTCCACTTCTTCTCCCCGGTGAAGATAATAAAACCACTAGTTCTAAGCTTAGAAAGAAGAAAGACCTAAACGAAGATAACAGTAGCAACTTCGATAACCGCTTCAAGCTCCGTAACGGAAAAGAGGTTTTTGAAGAGAAAGCTTATCTGGTTGGTGTTGAGCGAAAAGGTGATGTGAGTGATTCTTTTGGTGTACAAGATTCTTTGAGTGAATTGAAACAGTTAGCTGATACTGCTGGATTGTTGGTTGTTGACTCTACATACCAGAAGCTTGCTTCTCCAAACCCTAGGACTTACATTGGCTCCGGCAAAGTTTCTGAAATTAAGAGTGCAATTAATGCATTGGATGTTGAAACTGTGATATTTGATGATGAGCTATCAGCAGGGCAATTGCGCAACCTGGAAAAGGTTTTTGGTGGCAGTGTGAGAGTTTGTGATCGTACTGCTCTCATCCTTGATATATTTAATCAGCGAGCAGCAACTCATGAAGCATCTTTACAGGTTTCATTAGCACAAATGGAATACCAACTACCTCGTCTAACAAAAATGTGGACTCATCTTGAGCGTCAATCAGGAGGACAGGTGAAGGGAATGGGTGAAAAACAAATAGAAGTGGACAAGCGTATTTTGCGTAACCAAATTGGCGTTCTTAAAAAAGAGCTAGAATCTGTTAGGAAACACCGAAAGCAGTATCGTAATAGGCGTGTCTCAGTACCTGTGCCAGTGGTTTCTTTGGTCGGCTATACGAATGCTGGTAAGAGTACACTTTTAAATCAGTTAACCGGAGCAGATGTTCTTGCCGAGGATAAATTATTTGCAACTTTAGATCCAACTACACGGAGGGTACAGATGAAGAATGGAAAGGAGTTTCTCCTAACAGACACTGTGGGTTTTATTCAGAAGTTACCTACTACACTAGTTGCTGCCTTCAGAGCCACCCTCGAGGAAATATCAGAGTCATCACTTCTGGTGCATGTTGTTGATATCAGTCACCCCCTGGTTGAGCAACAGATAAATGCTGTGGACAAAGTTCTATCAGAACTAGATGTATCATCAATACCAAGATTGATGGTCTGGAACAAGATTGATAAGGCTAGTGATCCTCAGAAAATCAGGTTAGAAGCTGAAAAAAGAAATGATGTTGTATGCATATCTGCTTTAAGTGGCGACGGCTTGCAAAAATTCTGTAATGCAGTTCAAGACAAACTAAAGGACACAATGGTATGGGTGGAAGCTTTGTTACCATTTGAAAACGGGGACCTTCTCAGCACCATTCACCAAGTTGGAATGGTTGAGAAAACTGAATATACAGAGCAAGGGACATATATCAAGGCTCATGTGCCCCTACGTTTTGCAAGATTGCTTACACCTATGAGGCAACTGTGTATATCACGACCTTGA 1638 0.4151 MKTLYTSSYSSSLPLLPSTVPFHHQQQHFHHFRSLSSSTLSLNATPRDIELQFSSSNDTVQNPTIEFETPQHNEESPPPTPLLLPGEDNKTTSSKLRKKKDLNEDNSSNFDNRFKLRNGKEVFEEKAYLVGVERKGDVSDSFGVQDSLSELKQLADTAGLLVVDSTYQKLASPNPRTYIGSGKVSEIKSAINALDVETVIFDDELSAGQLRNLEKVFGGSVRVCDRTALILDIFNQRAATHEASLQVSLAQMEYQLPRLTKMWTHLERQSGGQVKGMGEKQIEVDKRILRNQIGVLKKELESVRKHRKQYRNRRVSVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLVEQQINAVDKVLSELDVSSIPRLMVWNKIDKASDPQKIRLEAEKRNDVVCISALSGDGLQKFCNAVQDKLKDTMVWVEALLPFENGDLLSTIHQVGMVEKTEYTEQGTYIKAHVPLRFARLLTPMRQLCISRP 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05085 545 PANTHER GTP-BINDING PROTEIN HFLX 83 529 IPR016496 GO:0005525
Vifa3g05085 545 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 320 486 IPR030394 GO:0005525
Vifa3g05085 545 NCBIfam small GTP-binding protein domain 321 477 IPR005225 GO:0005525
Vifa3g05085 545 Hamap GTPase HflX [hflX]. 148 511 IPR016496 GO:0005525
Vifa3g05085 545 MobiDBLite consensus disorder prediction 91 111 - -
Vifa3g05085 545 Pfam HflX C-terminal domain 452 520 IPR045498 -
Vifa3g05085 545 MobiDBLite consensus disorder prediction 68 111 - -
Vifa3g05085 545 Gene3D - 139 237 IPR042108 -
Vifa3g05085 545 Gene3D - 319 487 IPR027417 -
Vifa3g05085 545 FunFam Predicted protein 139 261 - -
Vifa3g05085 545 FunFam GTPase HflX 319 488 - -
Vifa3g05085 545 Pfam 50S ribosome-binding GTPase 322 440 IPR006073 GO:0005525
Vifa3g05085 545 CDD HflX 279 482 IPR030394 GO:0005525
Vifa3g05085 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 493 IPR027417 -
Vifa3g05085 545 Gene3D - 238 305 - -
Vifa3g05085 545 NCBIfam GTPase HflX 127 481 IPR016496 GO:0005525
Vifa3g05085 545 Coils Coil 293 313 - -
Vifa3g05085 545 PRINTS GTP1/OBG GTP-binding protein family signature 389 407 IPR006073 GO:0005525
Vifa3g05085 545 PRINTS GTP1/OBG GTP-binding protein family signature 322 342 IPR006073 GO:0005525
Vifa3g05085 545 Pfam GTP-binding GTPase Middle Region 237 314 IPR032305 -
Vifa3g05085 545 Pfam GTP-binding GTPase N-terminal 146 234 IPR025121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05085 Vifa-Chr3 1481953585 1481966920 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05085 3 1481953585 1481966920 Vifa3g05085 3 1481953585 1481966920 ECH