Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05065 ATGTTCAGAAACCAGTACGACACCGACGTCACTACATGGAGTCCAGCAGGACGACTATTCCAAGTGGAGTACGCCATGGAGGCTGTGAAGCAAGGTTCAGCCGCAATAGGTCTCCGATCCAAGACGCACGTGGTTCTCGCCTGCGTTAACAAAGCCAATTCTGAATTGTCTTCTCACCAGAAGAAGATTTTCAAGGTTGACGATCATATCGGAGTCGCTATCGCGGGTTTAACGGCTGACGGCCGTGTTCTTTCCCGTTACATGCGATCTGAATGTATTAACTATAATTACACTTATGAGTCTCCGCTTCCCGTTGGTCGGTTAGTTGTTCAGCTCGCCGATAAGGCTCAGGTTTGCACTCAGAGATCATGGAAGCGCCCCTATGGAGTTGGTCTTCTGGTAGCTGGATTAGATGAATCAGGGGCTCACCTCTATTACAACTGCCCAAGCGGAAACTACTTTGAGTACCAGGCTTTTGCAATTGGTTCTCGCTCACAAGCTGCAAAGACATATTTGGAACGCAGGTTTAACAACTTCACAGCCTCCTCCCGGGAAGATCTAATCAAAGATGCACTAATTGCAACTAGGGAGTCCTTGCAAGGTGAGAAGCTCAGAAGCTCCGTATGTACCATTGCTGTGGTTGGAGTTGGTGAGCCATTCCACATTTTGGATCAGGAAACGGTTCAACAGTTGATTGATACTTTTGAGATTGTGAGGGAGGAAGAAAGTGCATCTGCTGAACCTGAGGTAGCAACTGAGCAGGATGCTGCCCCGGATCAGGCTCCTGGTGCTGATCAAGGTGGCGCTGAAAACCAAGGTGGTGCCGAACCCCAAGGTGGTTCTCCAATGGACATTTGA 858 0.4907 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFNNFTASSREDLIKDALIATRESLQGEKLRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVREEESASAEPEVATEQDAAPDQAPGADQGGAENQGGAEPQGGSPMDI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05065 285 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511|GO:0019773
Vifa3g05065 285 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511|GO:0019773
Vifa3g05065 285 Pfam Proteasome subunit 29 214 IPR001353 GO:0005839|GO:0051603
Vifa3g05065 285 ProSiteProfiles Proteasome alpha-type subunit profile. 21 232 IPR023332 -
Vifa3g05065 285 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 235 IPR029055 -
Vifa3g05065 285 SMART Proteasome_A_N_2 6 28 IPR000426 GO:0006511|GO:0019773
Vifa3g05065 285 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 232 IPR029055 -
Vifa3g05065 285 MobiDBLite consensus disorder prediction 240 285 - -
Vifa3g05065 285 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 10 239 - -
Vifa3g05065 285 CDD proteasome_alpha_type_1 6 215 IPR035144 GO:0019773
Vifa3g05065 285 FunFam Proteasome subunit alpha type-6 2 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05065 Vifa-Chr3 1475589385 1475592883 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05065 3 1475589385 1475592883 Vifa3g05065 3 1475589385 1475592883 ECH