Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05061 ATGTCATTCAAGAGTATTGTGAGAGAGATCAAGGAGATGAAAGAAGGAATTGGAAACATGTATAGAAAAAGGGTAGAAGCTAAGCATATGTATAAACATGGAAAATCTCACATTGCACCAGAATGTTCTTCACCAATATCAATATCAATATCACCAACACAAACACCGTCTTCGTCATCGCCATCGTCACCGACCAAATGGGCTAGTTTACCTCCTGAGTTGCTATTAGACATAATTCAAAGAGTGGAAGCTAGTGAAACCTCTTGGCCGTCTCGCCGGGCACTTGTAGCTTGTGCCTTAGTTTGTAGATTGTGGAGAGAGATAACAAAAAGTGTGGTTAAGACACCTGAACAATGTGGTTGGATCACTTTCCCTATATCATTGAAGCAGCCTGGTCCAAGAGACAATACAATTCAGTGTTTTATTAAGAGAGAAAGGGTTTCTTCTACATATAGCTTATATCTTGGTTTGAGCCCTGCTCTTTCTGGTGATATGAGCAAACTTCTCTTAGCAGCAAAGAAGATAAGAAGAGCAACATGTACAGAATTTTTAATATCATTGGTTTCTAATGATTTCTCTCAATCTAGCAATACTTACATTGGAAAGTTAAGGTCTAATTTTCTCGGGACTAAGTTCACGATCTTGGACGGTCATCCTCCATATGATTCTTCGCTTCCATCGATTTGCAAGTTGCAACAAAACGTCCGTCGGAAGCAAGTACTTCCAAGAGCTGCTTCTGCTAACTATAAAGTAGCAACGGTGTCTTACGAACTCAATGTTCTTCGCACGAGAGGTCCAAGGCGAATGCGGTGTACGATGCACTTGATTCCCATATCTTCAGTCCAAGAGGGAGGAACTGCTCCTACTCCTATGGAGTTTAGCAATTGTCGTAATGAGCATGAATATTCAAAAGGAAAGAAGGCAGAAGTGGTTGAATTAGGCTCAACTTGCACTGATTTTGCAAGAGAACCACTGCTTTTGAAAAACAAAGCACCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAATTTCAAGGGACGGGTTACGGTGGCTTCGGTAAAGAATTTCCAGCTTGTAGCAGCTGCAGAACCTTGCCATAATGTTTCGGCTGCAGAACAAGAGAAAGTTATACTTCAATTTGGAAAAATTGGCAAGGACATTTTCACCATGGATTATCGATATCCTCTCTCCGCTTTTCAAGCTTTTGCAATCTGTTTGAGTAGCTTTGACACAAAACCAGCTTGTGAATGA 1254 0.4083 MSFKSIVREIKEMKEGIGNMYRKRVEAKHMYKHGKSHIAPECSSPISISISPTQTPSSSSPSSPTKWASLPPELLLDIIQRVEASETSWPSRRALVACALVCRLWREITKSVVKTPEQCGWITFPISLKQPGPRDNTIQCFIKRERVSSTYSLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVSNDFSQSSNTYIGKLRSNFLGTKFTILDGHPPYDSSLPSICKLQQNVRRKQVLPRAASANYKVATVSYELNVLRTRGPRRMRCTMHLIPISSVQEGGTAPTPMEFSNCRNEHEYSKGKKAEVVELGSTCTDFAREPLLLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05061 417 Gene3D Tubby Protein; Chain A 125 417 IPR025659 -
Vifa3g05061 417 SUPERFAMILY Tubby C-terminal domain-like 116 417 IPR025659 -
Vifa3g05061 417 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Vifa3g05061 417 PANTHER TUBBY-RELATED 57 415 - -
Vifa3g05061 417 CDD F-box_AtTLP-like 67 110 - -
Vifa3g05061 417 SUPERFAMILY F-box domain 59 111 IPR036047 GO:0005515
Vifa3g05061 417 Pfam Tub family 128 412 IPR000007 -
Vifa3g05061 417 PRINTS Tubby superfamily signature 183 199 IPR000007 -
Vifa3g05061 417 PRINTS Tubby superfamily signature 395 417 IPR000007 -
Vifa3g05061 417 PRINTS Tubby superfamily signature 248 275 IPR000007 -
Vifa3g05061 417 PRINTS Tubby superfamily signature 199 223 IPR000007 -
Vifa3g05061 417 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Vifa3g05061 417 PRINTS Tubby superfamily signature 374 393 IPR000007 -
Vifa3g05061 417 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Vifa3g05061 417 ProSitePatterns Tub family signature 2. 402 417 IPR018066 -
Vifa3g05061 417 Pfam F-box domain 67 113 IPR001810 GO:0005515
Vifa3g05061 417 Gene3D - 62 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05061 Vifa-Chr3 1474539998 1474541521 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vifa3g05061 Tub 9e-105 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05061 3 1474539998 1474541521 Vifa3g05061 3 1474539998 1474541521 ECH