Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05057 ATGAGGTGGAGAAGTTTACTTTCTCTTCATTCTTCAAGAAACGCAATCAACAGACTCAAATCAATCTCAAATTCCCCACTCCCCACAATTCTCCTCAAACGACTACCCGTTTCATCATTCACCGCTTACCGCAACTTTCATTCCCATTCCCCCGAACTCGGTAACTCGTTAATCGATCCATCACTCCGAACTCACTTCAAAAACGACGCCGTTCATCAAACCCACGATGAAGACGAAACAACCAACGAGTTCCTCTCACGATTTGCTTGGATAATGCGGAAGAAGGTGAAGGAGTCTTACCCCGAGAGCGATAAAGACACTGTTGATGCCATGCTGCTCGTTATTGTCCAGAGAGTTGCTTCGGAAATGGAGAAGGATGGTGCTGCAACCGCGTCGTTTTCACCTTTTGACTCCGTGGATTTCAGCGAGGATCTTTGGAGGACTGTGTGGGAGGTTAGTAATAAGGTGTTGATTGATATGAATAAAGAGAGGAAGAAGGAGAAAATGAAAGGGTTTTTGCAGTGTGATGAAGTCAAAGAGATGTGTAGGTTCGCCGGCGAGGTTGGTATTCGAGGGAATTTGCTTCGAGAGCTTAGGTTTAAATGGGCGCGTGACAAAATGGAGGAGCATGAGTTTAATGAGGATTTGGAGAAATTCAGAAAAGAGGGAGATGTTATTGAACAAGAAGTCGAAAATGATACCGAAACTGAAATTAATGTTGACGGTAATGGTAATGTTGAGGAGAATAAGGTTGTTGGGCTTCCTAAGAGGAAAGGGAAAATGAGGTTTAAGATATATGGGCTTGATCTATCTGATCCTAAATGGGAGCAAGTGGCGGATAGGATTCATGAGGCGGGACAAGTTCTTTGGCCGAAGGAGGCAAACCCGATTACTGGGAAATGCAAACAAGTTACGGAGAAAATCTTGTCGTTGAAGAAGGAGGACGGGGATGATAATTTGTTAACCCTGTTGTCTGAGTGGGTAGAACTTCTAGAGCCTACTAGGGTGGATTGGATCAATTTGCTTGATAGGTTGAAAAACCAGAATTCTCCTTTTTACTTCAAGGTGGCAGAAATGGTATTGACTGAAGATTCTTTCCAAACAAATATATCTGACTACTCTAGGCTTATTGATATGTATGCTAAAGAGAACCGCATTGATGATACTGAGAGGATGCTTAAGAAGATGAACAAAAATGGTATACAGTTAGATGCTTCGATAGCCAGTGTGTTGGTCCACATGTACAGCAAGATAGGTAACCTGGAACGTGCAGAAGAAGCATTTAAAGTCTTGAATGACCTGGGTTTCCAACCAGACACTAAAGTCTACAACTCAATGATCATGGCCTATATAAATGCCGGTGAACCTACAAAAGGTGAGACACTGATGAGGCAGATGGACACACGAGATATTAAGCCCACAAAGGAAATATACATGTCATTGCTCCGATACTATGCTCAACGTGGTGACTTCAATCGTGCCTCACGAACTTCAACATCTCTGCAGTTTGCAGGACACCAGCAGACTATGGAGACATGCACCCTGCTCATTGAAGCAGCTGCAGTTTCAGGTGACTTAGATAAGGTAAGCTCCAATTTTGACCACATGGTACAACTTGGGCATAAGCCTGATGATAGGTGCGCTGCTGCCATGATTCACGCCTATAAGAAGGAAAATTTGTTGGACAAGGCATTGGATCTTCTTTTGACGTTAGAGAAGGACGGGTTTGAGCCTGGGGTTGCAACATATTCTGTTCTTATTGATTGGCTGGCAAAAATGCAGCTTGTTGATGAAGCTGAACAGATTTTAAATAAAATTGCTCTGCTGGGTGAGGCTCCTCCTTTTAATGTTCAAGTTAGTCTGTGTGATATGTATGCATGGACTAAAATGGAGAAAAAGGCCCTTCAAACACTAGGCGTTTTGATAGCTAGGAAGAACGAATTAAAAGAACACGAGTTTGAGAGGGTTATAACCGGCCTTATTGGTGGGGGGTTTATGCGGGACGCACAAAGAATGCATGGGATCATGGAGGCACAGGGTTTCAAAGCATCTGGACAGCTTATTTCAGCCCTTAAATCTGGCGACTTACTATTAAGTATGATGTCATGA 2109 0.4324 MRWRSLLSLHSSRNAINRLKSISNSPLPTILLKRLPVSSFTAYRNFHSHSPELGNSLIDPSLRTHFKNDAVHQTHDEDETTNEFLSRFAWIMRKKVKESYPESDKDTVDAMLLVIVQRVASEMEKDGAATASFSPFDSVDFSEDLWRTVWEVSNKVLIDMNKERKKEKMKGFLQCDEVKEMCRFAGEVGIRGNLLRELRFKWARDKMEEHEFNEDLEKFRKEGDVIEQEVENDTETEINVDGNGNVEENKVVGLPKRKGKMRFKIYGLDLSDPKWEQVADRIHEAGQVLWPKEANPITGKCKQVTEKILSLKKEDGDDNLLTLLSEWVELLEPTRVDWINLLDRLKNQNSPFYFKVAEMVLTEDSFQTNISDYSRLIDMYAKENRIDDTERMLKKMNKNGIQLDASIASVLVHMYSKIGNLERAEEAFKVLNDLGFQPDTKVYNSMIMAYINAGEPTKGETLMRQMDTRDIKPTKEIYMSLLRYYAQRGDFNRASRTSTSLQFAGHQQTMETCTLLIEAAAVSGDLDKVSSNFDHMVQLGHKPDDRCAAAMIHAYKKENLLDKALDLLLTLEKDGFEPGVATYSVLIDWLAKMQLVDEAEQILNKIALLGEAPPFNVQVSLCDMYAWTKMEKKALQTLGVLIARKNELKEHEFERVITGLIGGGFMRDAQRMHGIMEAQGFKASGQLISALKSGDLLLSMMS 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05057 702 Coils Coil 379 399 - -
Vifa3g05057 702 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Vifa3g05057 702 Gene3D Tetratricopeptide repeat domain 337 431 IPR011990 GO:0005515
Vifa3g05057 702 Gene3D Tetratricopeptide repeat domain 432 501 IPR011990 GO:0005515
Vifa3g05057 702 NCBIfam pentatricopeptide repeat 442 474 IPR002885 -
Vifa3g05057 702 NCBIfam pentatricopeptide repeat 373 405 IPR002885 -
Vifa3g05057 702 Gene3D Tetratricopeptide repeat domain 502 696 IPR011990 GO:0005515
Vifa3g05057 702 Pfam Pentacotripeptide-repeat region of PRORP 381 495 IPR033443 -
Vifa3g05057 702 PANTHER OS07G0661900 PROTEIN 91 686 - -
Vifa3g05057 702 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Vifa3g05057 702 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 613 IPR002885 -
Vifa3g05057 702 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Vifa3g05057 702 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Vifa3g05057 702 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Vifa3g05057 702 Pfam Pentatricopeptide repeat domain 534 589 IPR002885 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05057 3 1473732635 1473735460 Vifa3g05057 3 1473732635 1473735460 ECH