Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05053 ATGAAGCAAGAGAATGAAGAAGGAAGGGATCTGAAGAAGCCCTTTTTACACACAGGAAGTTGGTATAAAATTAGTGGAAGAAGAGAATCATCAAGTTTGTTTGGGTCAACTCAAGCAATTCGTGATTCTTCAATTTCTGTTATTGCTTGTGTTCTCATTGTTGCTTTGGGTCCAATTCAGTTTGGTTTTACAGCAGGGTATACGTCACCTACTCAATCAGCTATCATCACTGATCTTGGTCTCTCAGTTTCTGAGTTTTCTTTGTTTGGTTCATTGTCAAATGTGGGTGCTATGGTTGGAGCAATAGCTAGTGGTCAAATTGCTGAGTATGTTGGGCGCAAAGGGTCTTTGATGATTGCATCCATTCCCAATATTATTGGTTGGTTGTTCATATCTTTTGCAAAAGATTCTTCTTTTCTCTATATGGGAAGATTATTGGAAGGATTTGGTGTTGGAATAATATCTTACACGGTGCCAGTATATATAGCTGAGATATCACCTCAAAACTTAAGGGGAAGTCTGGTTTCAGTAAACCAGCTTTCTGTCACAATTGGAATTATGCTGGCTTATCTACTAGGACTTTTTGTTGAATGGAGATTCCTTGCAATTTTAGGAATTATACCCTGTACATTATTAATACCTGGTCTATTCTTCATTCCTGAGTCTCCAAGATGGCTAGCCAAAATGGGCATGACAGAAGAATTTGAACGTTCCTTGCAAGTGCTCAGAGGCTTCGAAACTGATATTTCAGTTGAAGTCAATGAAATTAAGGCTTCTGTTGCATCAGCAAATAGAAGAAACACCGTTCGGTTTTCAGAACTCAATCAAAGAAGATATTGGCTTCCTTTAATGATTGGAATTGGACTTCTTGTTTTGCAACAGCTTTCTGGGATTAATGCTGTTCTTTTTTATTCCAGTACCATCTTTCAAAATGTTGGAATTAGTTCGAGTGACGTAGCTACATTTGGAGTTGGTGCTGTTCAGGTTCTTGCTACCATTTTAACTTTGTGGTTGGCAGACAAATCTGGTCGTCGCCTTCTACTTATTGTTTCTTCATCTGCAATGGCTTTGAGTCTTTTGGTTGTTTCAATATCATTCTACTTGAAGGAATATATATCACCAGATTCTGATTTATATGCGACATTGGGCCTTTTATCGGCGGCTGGAGTTGTGGTCATGGTTATCGCATTCTCTCTGGGATTGGGAGCAATGCCATGGATTATAATGTCTGAGATTCTTCCGATTAACATCAAAGGCCTAGCTGGAAGTTTTGCAACACTTGCCAATTGGTTCTTTTCTTGGTTGGTTACATTGAGCGCAAATTTGCTCTTGGATTGGAGTTCTGGAGGAACCTTCACAATATATACTGCAGTGTGTGTTTTCACAGCAGGATTTGTTGCCATTTGGGTCCCTGAGACAAAGGGGAAAACTCTCGAAGAAATACAACAGTTTTTCAGATGA 1461 0.3915 MKQENEEGRDLKKPFLHTGSWYKISGRRESSSLFGSTQAIRDSSISVIACVLIVALGPIQFGFTAGYTSPTQSAIITDLGLSVSEFSLFGSLSNVGAMVGAIASGQIAEYVGRKGSLMIASIPNIIGWLFISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEISPQNLRGSLVSVNQLSVTIGIMLAYLLGLFVEWRFLAILGIIPCTLLIPGLFFIPESPRWLAKMGMTEEFERSLQVLRGFETDISVEVNEIKASVASANRRNTVRFSELNQRRYWLPLMIGIGLLVLQQLSGINAVLFYSSTIFQNVGISSSDVATFGVGAVQVLATILTLWLADKSGRRLLLIVSSSAMALSLLVVSISFYLKEYISPDSDLYATLGLLSAAGVVVMVIAFSLGLGAMPWIIMSEILPINIKGLAGSFATLANWFFSWLVTLSANLLLDWSSGGTFTIYTAVCVFTAGFVAIWVPETKGKTLEEIQQFFR 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05053 486 ProSitePatterns Sugar transport proteins signature 1. 104 121 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vifa3g05053 486 ProSiteProfiles Major facilitator superfamily (MFS) profile. 50 474 IPR020846 GO:0022857
Vifa3g05053 486 NCBIfam sugar porter family MFS transporter 40 481 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa3g05053 486 ProSitePatterns Sugar transport proteins signature 2. 146 171 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vifa3g05053 486 PANTHER - 40 483 - -
Vifa3g05053 486 FunFam sugar transporter ERD6-like 6 41 485 - -
Vifa3g05053 486 CDD MFS_GLUT6_8_Class3_like 48 480 IPR044775 GO:0008643|GO:0051119
Vifa3g05053 486 Gene3D MFS general substrate transporter like domains 40 486 IPR036259 -
Vifa3g05053 486 SUPERFAMILY MFS general substrate transporter 51 482 IPR036259 -
Vifa3g05053 486 Pfam Sugar (and other) transporter 51 485 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vifa3g05053 486 PRINTS Sugar transporter signature 387 408 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa3g05053 486 PRINTS Sugar transporter signature 141 160 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa3g05053 486 PRINTS Sugar transporter signature 410 422 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa3g05053 486 PRINTS Sugar transporter signature 293 303 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa3g05053 486 PRINTS Sugar transporter signature 58 68 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05053 Vifa-Chr3 1472114438 1472118383 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05053 3 1472114438 1472118383 Vifa3g05053 3 1472114438 1472118383 ECH