Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05052 ATGCCTGTCACCACCGCAACTATGGAGAAAGACGACAGTGGCGCTGCTGTTAGGGCAAGAATTCTTCTCTCGGATTTTCTGCACAGCTTGAAACTCAAGTACCTCAAGTTAGGTTATCCTTACTTAATCTCAAATCTCTTAACCCTATCTTTAATTCCCTTAATAATATCCACTTTTATCCAAATCTACCAAACACAAAGCCTCAACAAACTATGGATTGTTGAATGCAACTACAATCTCACTTTCGTCGGTTTCACACTCTTTGCTTTCATTTTCCATATTCACACGCGCCCACGCGCCGTCTACCTTATAGACTTCTCTTGTTTCCGTCCCGCAGATAACCTTAAAGCTCCGTTCCACAGCTTCATCCAACATTCTCATCTCACCGGCGACTTCGATGACTCCTCTTTAGATTTCCAGCGCAAGATTCTTCTTCGATCTGGCCTCGGCGACGAAACTTACGTTCCTGAAGCCATGCATTGCATTCCTCCCCGCCCTTCGATCTTTGCGGCAAGATGTGAAGCAGAATCCGTCATGTTTGGTGCCTTGGATAATCTCTTCAATAATACAAACCTTAATCCAAAAGAAATTGGAATTCTCGTTGTGAATTGTAGTTTGTTTAACCCTATACCTTCACTTTCTTCAATGATTGTGAATAAATATAACCTCAGAAGGAACATTATGAGTTTCAATTTAGCTGGAATGGGTTGTAGTGCGGGTGTTATAGCTACTGATCTTGCAAGAGATTTGTTGATGGTTCAAAAGAATGATACTTATGCTGTTGTTGTTAGCACTGAAAATATTACTCAGAATTGGTACTTTGGGAATAAAAAATCAATGCTTATACCTAATTGTTTGTTTAGAGTTGGTTGTTCCGCTGTTTTGCTATCCAATAAATCTCTTGATAGCACGAGGGCTAAGTATAAGCTTGTTCATGTTGTGAGGACGCATTGCGGTGCAGACGATAAGGCCTACCAATGTGTTCATCAGGAAGAAGATGCGGTGGGGAAAACTGGTGTTTCGTTGTCGAAAGATTTGATGGGAATTGCTGGTTTGGCATTAAAATCCAATATTACTACATTTGGTCCTTTGGTGCTTCCAGTTACCGAGCAGCTTAAGATTTTATCTAATTTGGTTTTTAGGAAGTTTTCTAATAGAGATGTGAAGCCTTATATACCAGATTTCAAACTCGCCTTCGATCATTTCTGCATACATGCTGGTGGAAGGGCTGTGATTGATGAGTTGGAGAAGAATCTTGAGTTGCTTCCGGTACACGTGGAGCCTTCTAGGATGACGCTTCATCGGTTCGGGAACACTTCCTCGAGCTCTATTTGGTATGAGTTGGCGTATATTGAAGCTAAAGGGAGGGTTAAGAAGGGTAACAAAGTTTGGCAAATTGCATTTGGAAGTGGTTTTAAGTGTAATAGTGTTGTTTGGGAGGTGATTCATGACGTGACGCCTTCTCCTAATGGACCATGGGAAGATTGCATTGATAAGTATCCTGTGGAAATACTCGCATAG 1521 0.4135 MPVTTATMEKDDSGAAVRARILLSDFLHSLKLKYLKLGYPYLISNLLTLSLIPLIISTFIQIYQTQSLNKLWIVECNYNLTFVGFTLFAFIFHIHTRPRAVYLIDFSCFRPADNLKAPFHSFIQHSHLTGDFDDSSLDFQRKILLRSGLGDETYVPEAMHCIPPRPSIFAARCEAESVMFGALDNLFNNTNLNPKEIGILVVNCSLFNPIPSLSSMIVNKYNLRRNIMSFNLAGMGCSAGVIATDLARDLLMVQKNDTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGCSAVLLSNKSLDSTRAKYKLVHVVRTHCGADDKAYQCVHQEEDAVGKTGVSLSKDLMGIAGLALKSNITTFGPLVLPVTEQLKILSNLVFRKFSNRDVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLELLPVHVEPSRMTLHRFGNTSSSSIWYELAYIEAKGRVKKGNKVWQIAFGSGFKCNSVVWEVIHDVTPSPNGPWEDCIDKYPVEILA 506
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05052 506 SUPERFAMILY Thiolase-like 310 481 IPR016039 GO:0016746
Vifa3g05052 506 SUPERFAMILY Thiolase-like 88 303 IPR016039 GO:0016746
Vifa3g05052 506 FunFam 3-ketoacyl-CoA synthase 111 481 - -
Vifa3g05052 506 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 399 480 IPR013747 -
Vifa3g05052 506 Pfam FAE1/Type III polyketide synthase-like protein 95 382 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vifa3g05052 506 CDD CHS_like 85 479 - -
Vifa3g05052 506 PANTHER 3-KETOACYL-COA SYNTHASE 82 503 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vifa3g05052 506 PIRSF Very_long_ch_3-ktacl-CoA_syn 25 506 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vifa3g05052 506 Gene3D - 130 481 IPR016039 GO:0016746
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa3g05052 Vifa-Chr3 1472112365 1472113885 Transposed
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05052 3 1472112365 1472113885 Vifa3g05052 3 1472112365 1472113885 ECH