Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05041 ATGAAAATGAAGAATGGAATAACAGTAAGTGTTGTTATGCTGATGTTTTTGTTAGTTGAGTTAACAATGAGTTCGAGTTCGAGTTCAAGAGCTGAAAAGTTTGCATTATTGGAGCTTCGGTCATCGTTGGGTATAAGGGCGAAAAATTGGCCTATTAAAAGTGAACCGTGTCAGAACTGGACGGGTGTTGAATGCAATAACAGTCGAGTTGTTGGTATCAACGTGTCCGGATTGAAGAGAACTCACAAGGGTCGTCTTATGCCGAATTTTGAAGTGGATTCTCTTGCAAATTTCACACTATTGGGGTCTTTCAATGCTTCTGGTTTCATGCTTAATGGGTCTATACCAGATTGGTTTGGGAATAATCTTACTAGTAGAGTCCCTTCGAGTTTGGGGTTCTTATCTAGTCTTTCTATTCTTGATCTCTCTGGGAATTTGTTTTCAGGATCAATACCTGAATCGTTCTCTAATCTTGGTAACCTTACAAACCTTGATCTTTCTAATAATTACTTATCTGGGTCTATTCCACCTGAACTCGGTGTCCTTTCAAATCTTCAAATTTTGAATCTTTCTGATAACGCCTTCACTGCTTCGGTTCCTTCTCAGTTAGGCAACCTTTCAAAGTTGGTTGAGCTTGATCTTAGTATGAATTCAATTGATGGTGATCTTCCTGATGCTATATGGTCATTGCCTAGATTGCAGTTATTTGATGTATCAGGCAACAGTCTCTCTGGTCCACTGCCAAAATTGTCTGGTTTAAATGTTAGCTCAAACAGTGGCGTATTCAATTTATCAAACAATCTGTTCTATGGACCTGTGAATGGTTTGAAGAACAGGATTAAAATGATTGATTTGTCCGGTAATTATTTGGAAGGTGATGTGGAAAATGGTCTTAGTAATGTAACTCTAGCTAGAAATTGCCTACAGATGATTTCAAACCAGAGGAATTTGAAAGAGTGTAGAATGTTTTATGCCCAGAATAATGTAACATTTGATTATGGTAACCATGTGACAGAAAAAAAGAAACGAGTGATATTCATACTGGCAGGTATATTTGGTGGATTGGGATTCATTGTGCTACTGGTATTGGTCGTCATACTGGTTCTAAAACAATGTCATAAAAGTAAAGATATGGAAATTGAAAGAGGGATCACAAATGGGGGGGCTGTTAAAGAAGAGGAAAGTCCTACACCTAAGGATCCTGTTTTCGTAACAGCTGTCGGAGAATCATTTACTTTCGAACAAATACTCCATTTTACTGGAAATTTCGACGAAGCAAACTTGATAAAACATGGTCATTCTGGAGTTTTGTTCTTTGGAGTTTTGGACAGTGGAGTAACTGTGGTTGTCAAAAGGGTGGATTTAAGTTTATTTAAAAGAGAATCTTACATTGCAGAGTTGGGATTGTTAAGCAAGATTTCGCATGCAAGATTGGTCCCAATTCTAGGACAGTGCATGGATAATGAGAAGGATAAATGTATAGTTTACAAGTATATGATAAATGAAGATTTGGCTACTTCCTTACATAGAGTCAGTGGTTCGGATGGGAAGTTGCAATCCCTTGATTGGATCACAAGATTGAAAATCGCAACAGGAGCTGCTGAAGGCCTAGCTTACTTACATGATTGCAGCCCTCCTCTTGTTCACAGAGATATCCGAGCCAGTAGTATACTTCTCGATGATAAATTTGAAGTGCGGCTTGGAAGTTTAAGTGAGGTTACTGCCCAAGAAGATTTTCATCAGAATGTAGTGTCAAGAGTTTTCAGCAAACCACTATCTTCTAATCAGGGAAATTCTGGTAAATCATCTGTGACATGTGCTTATGATGTCTACTGTTTTGGGAAGATTTTACTCGAGCTAGTTACCGGTAATGTCGACATCAGCGAATCAGATGATGCAATGACAAAGGATTGGATAGAGCAAACCTTGAATTACATCACCATATTCGATAAAGAACGATTGGCTAAGATCGTTGACCCGTCTTTGATAGTGGATGAGGACCTATTGGAAGAGGTATGGGCAATGGCAATAGTGGCCAAGTCGTGCCTTAATCCTAAGCCTTCCAAACGACCTCCAATGAAACATGTTCTCAAAGCACTTGAAAATCCATTGAAGATTGTGAGAGAAGAAAGTTTTAGCTCAGCGAAATTGAGAACAACTTCATCGAATAGATCGTGGAGCACTGCGTTGTTTGGTAGCTGGAGACACAGCTCATCAGACAGTGGTGCAACTGCTACGAATAGGGAGGGTTCTAGTGGCATTAAACAAACAGGAAGAGTAAGTTCTCATGGTAGCGGTGGCATCGATCACTCATCTTCGAATAAAAGATCATCCAATGAAATATTCCCAGAACCGTTGGGAATGCAAGACTTAGAGAATGGAGAGTTAAGATGA 2394 0.3926 MKMKNGITVSVVMLMFLLVELTMSSSSSSRAEKFALLELRSSLGIRAKNWPIKSEPCQNWTGVECNNSRVVGINVSGLKRTHKGRLMPNFEVDSLANFTLLGSFNASGFMLNGSIPDWFGNNLTSRVPSSLGFLSSLSILDLSGNLFSGSIPESFSNLGNLTNLDLSNNYLSGSIPPELGVLSNLQILNLSDNAFTASVPSQLGNLSKLVELDLSMNSIDGDLPDAIWSLPRLQLFDVSGNSLSGPLPKLSGLNVSSNSGVFNLSNNLFYGPVNGLKNRIKMIDLSGNYLEGDVENGLSNVTLARNCLQMISNQRNLKECRMFYAQNNVTFDYGNHVTEKKKRVIFILAGIFGGLGFIVLLVLVVILVLKQCHKSKDMEIERGITNGGAVKEEESPTPKDPVFVTAVGESFTFEQILHFTGNFDEANLIKHGHSGVLFFGVLDSGVTVVVKRVDLSLFKRESYIAELGLLSKISHARLVPILGQCMDNEKDKCIVYKYMINEDLATSLHRVSGSDGKLQSLDWITRLKIATGAAEGLAYLHDCSPPLVHRDIRASSILLDDKFEVRLGSLSEVTAQEDFHQNVVSRVFSKPLSSNQGNSGKSSVTCAYDVYCFGKILLELVTGNVDISESDDAMTKDWIEQTLNYITIFDKERLAKIVDPSLIVDEDLLEEVWAMAIVAKSCLNPKPSKRPPMKHVLKALENPLKIVREESFSSAKLRTTSSNRSWSTALFGSWRHSSSDSGATATNREGSSGIKQTGRVSSHGSGGIDHSSSNKRSSNEIFPEPLGMQDLENGELR 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05041 797 MobiDBLite consensus disorder prediction 734 780 - -
Vifa3g05041 797 SUPERFAMILY Protein kinase-like (PK-like) 403 700 IPR011009 -
Vifa3g05041 797 FunFam Putative LRR receptor-like serine/threonine-protein kinase 499 720 - -
Vifa3g05041 797 Gene3D Phosphorylase Kinase; domain 1 387 498 - -
Vifa3g05041 797 Pfam Leucine rich repeat 183 243 IPR001611 GO:0005515
Vifa3g05041 797 ProSiteProfiles Protein kinase domain profile. 423 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g05041 797 Pfam Leucine rich repeat N-terminal domain 32 66 IPR013210 -
Vifa3g05041 797 ProSiteProfiles Leucine-rich repeat profile. 160 182 IPR001611 GO:0005515
Vifa3g05041 797 ProSiteProfiles cAMP/cGMP binding motif profile. 428 481 IPR000595 -
Vifa3g05041 797 SMART LRR_typ_2 134 157 IPR003591 -
Vifa3g05041 797 SMART LRR_typ_2 182 205 IPR003591 -
Vifa3g05041 797 SMART LRR_typ_2 206 230 IPR003591 -
Vifa3g05041 797 SMART LRR_typ_2 158 180 IPR003591 -
Vifa3g05041 797 Gene3D Transferase(Phosphotransferase) domain 1 499 722 - -
Vifa3g05041 797 FunFam Leucine-rich repeat receptor protein kinase EMS1 151 250 - -
Vifa3g05041 797 FunFam Predicted protein 394 498 - -
Vifa3g05041 797 MobiDBLite consensus disorder prediction 734 797 - -
Vifa3g05041 797 Pfam Protein tyrosine and serine/threonine kinase 430 699 IPR001245 GO:0004672|GO:0006468
Vifa3g05041 797 Gene3D Ribonuclease Inhibitor 29 333 IPR032675 -
Vifa3g05041 797 SUPERFAMILY L domain-like 42 301 - -
Vifa3g05041 797 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 121 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05041 Vifa-Chr3 1469227267 1469230347 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Vifa3g05041 PK_Tyr_Ser-Thr 2e-20 CL0016