Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05037 ATGTCTTTCTCTTCAGTCCACGCTCGTCTCACACTCCTCGCTCTCTTATCCGCCACAACCTTTTACTGCTTCTACAAATCTCGCCGCTTAAGAAACCTCAAGTTAACAACACTCTCTCTAAACCCTAACCCTAACCCTAACCCTAACCCTAAGATCCTCTTCCTTTCCGAAACCGGCACTTCCAAATCCCTCGCTAACCGTCTCCATCGTTTCCTCGCTTTAAACGACGTCGTTGTGGACCTTATCGATGGCAGAAACTACGAGCCTGAAGATCTCCCCAAAGAAACGCTCATTCTCATCGTTGCTTCTACATGGGAAGACGGAAAACCATCGCCTGCTTATAGATTCTTCGCGGACTGGCTCGCCGAGAGTTCCGAAGACTTTCGAGTTGGTTCTTTGCTGCTCTCGAAGTGTAGGTTTGCGGTTTTTGGTGTAGGTAGTAGAGCTTACGGGGAGAATTTCAATGCGGTTGGTAAGGATCTCGGTAAACGGATGAAAGCGCTGGGGGCTGCTGAGTTGGTTCCGTTGTGGGAAGGGGATGTTGATGGTGGTGACTTGGATGGGGTTTTTGATAAGTGGTGTGGGAAGGTGGTTGGATTGTTGAAAGGGGGTGGTGATGTTGTTGTTGTTGGTGGTTTGGAGAACGGGGATGTGGAACGTGGTGTTTTGAGTTCTGATGAAGAGGAATCTAATGAGGAGGAAGAGGCGGAGTCGGAGATTGTTGATCTTGAAGATATTGCTGGTAAAGCTCCTTCGAGGAAGTCGGTGACAACAGTGAAGGAGACTAACGGGAAGTTAAATGGGAAGAAAGAAATGGTGACTCCGGTGATTAGAGCAAATTTGGTGAAGCAGGGATATAAGATTATTGGTTCACATAGTGGTGTCAAGATTTGTAGATGGACCAAGTCACAGCTTCGAGGTCGAGGTGGTTGCTACAAGCATTCATTTTATGGAATTGAGAGTCACAGGTGCATGGAGGCAACCCCTAGCTTGGCATGTGCAAACAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGCAAAAAGTTGGCAGTGGGAGATGGACGATCCATTAGAGATCGTAAATTCCGCAATAGAGCAGCATACAAATATGATTAAACAAATGAAAGGAGTTCCTGGAGTCACCTTGGAGCGATTAAATGAAGGCTTCACACCACGGCATTGTGCATTATCTCTTGTTGGTGAACCTATTATGTATCCAGAGATAAATGCACTTGTGGATGAGTTGCACAAAAGGAGAATTTCCACTTTTCTAGTTACAAATGCACAATTTCCAGAGAAAATTAAGGCGCTGAGGCCTATCACCCAGTTGTATGTCAGTGTTGATGCTGGAACAAAGGACTCTCTAAAGGCAATCGATAGGCCGCTCTTTGGAGATTTTTGGGAAAGATTTATTGATTCCTTGACTTCTCTGAAGGAAAAACATCAGCGAACTGTGTACCGCCTGACCCTTGTGAAAGGATGGAATGCTGAAGAAGTTGATGCTTACTATAATCTCTTTAGTTTAGGAGAACCCGACTTCATTGAAATCAAGGGTGTTACATATTGTGGCTCGACTGCTACGTCAAAATTGACAATGGAGAATGTCCCTTGGCATGCCGACGTGAGAGCTTTCTCAGAGGCTCTGGCTCTGAAAAGCCAAGGGGGGTATGAAGTTGCATGTGAGCATGTTCACTCATGTTGTGTCCTCTTAGCAAAAACTAAGAAGTTCAAAATTGATGGCCAGTGGCATACATGGATAGACTATGAGAAATTTCATGATCTGGTGGCTTCTGGGAGTACTTTTGATAGCAAAGATTATATGGCTGCCACACCATCCTGGGCGGTCTATGGAGCTGAGGAAGGTGGATTTGATCCAGCACAATTGAGATATAGGAAAGAGAGACATCACAAGTCGACCCACAAAGGATCAGAGATTGTTACGTTATTTTCTCGGCCATCAAACCTCCGATGA 1980 0.454 MSFSSVHARLTLLALLSATTFYCFYKSRRLRNLKLTTLSLNPNPNPNPNPKILFLSETGTSKSLANRLHRFLALNDVVVDLIDGRNYEPEDLPKETLILIVASTWEDGKPSPAYRFFADWLAESSEDFRVGSLLLSKCRFAVFGVGSRAYGENFNAVGKDLGKRMKALGAAELVPLWEGDVDGGDLDGVFDKWCGKVVGLLKGGGDVVVVGGLENGDVERGVLSSDEEESNEEEEAESEIVDLEDIAGKAPSRKSVTTVKETNGKLNGKKEMVTPVIRANLVKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVAKSWQWEMDDPLEIVNSAIEQHTNMIKQMKGVPGVTLERLNEGFTPRHCALSLVGEPIMYPEINALVDELHKRRISTFLVTNAQFPEKIKALRPITQLYVSVDAGTKDSLKAIDRPLFGDFWERFIDSLTSLKEKHQRTVYRLTLVKGWNAEEVDAYYNLFSLGEPDFIEIKGVTYCGSTATSKLTMENVPWHADVRAFSEALALKSQGGYEVACEHVHSCCVLLAKTKKFKIDGQWHTWIDYEKFHDLVASGSTFDSKDYMAATPSWAVYGAEEGGFDPAQLRYRKERHHKSTHKGSEIVTLFSRPSNLR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05037 659 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 13 642 IPR034556 GO:0008033|GO:0051539
Vifa3g05037 659 Coils Coil 226 246 - -
Vifa3g05037 659 Gene3D Aldolase class I 254 588 IPR013785 -
Vifa3g05037 659 PRINTS Flavodoxin signature 137 147 IPR001094 GO:0010181
Vifa3g05037 659 PRINTS Flavodoxin signature 51 64 IPR001094 GO:0010181
Vifa3g05037 659 PRINTS Flavodoxin signature 99 110 IPR001094 GO:0010181
Vifa3g05037 659 PRINTS Flavodoxin signature 162 181 IPR001094 GO:0010181
Vifa3g05037 659 FunFam S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 260 589 - -
Vifa3g05037 659 SFLD tRNA wybutosine-synthesizing 268 579 IPR034556 GO:0008033|GO:0051539
Vifa3g05037 659 SFLD tRNA wybutosine-synthesizing 268 579 - -
Vifa3g05037 659 SUPERFAMILY Flavoproteins 49 201 IPR029039 -
Vifa3g05037 659 Gene3D - 24 204 IPR029039 -
Vifa3g05037 659 ProSiteProfiles Flavodoxin-like domain profile. 50 198 IPR008254 GO:0010181
Vifa3g05037 659 Pfam Radical SAM superfamily 329 508 IPR007197 GO:0003824|GO:0051536
Vifa3g05037 659 Pfam Flavodoxin 52 193 IPR008254 GO:0010181
Vifa3g05037 659 CDD Radical_SAM 329 529 - -
Vifa3g05037 659 SUPERFAMILY Radical SAM enzymes 330 526 - -
Vifa3g05037 659 ProSiteProfiles Radical SAM core domain profile. 317 560 IPR007197 GO:0003824|GO:0051536
Vifa3g05037 659 Pfam Wyosine base formation 512 575 IPR013917 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05037 3 1467834345 1467840609 Vifa3g05037 3 1467834345 1467840609 ECH