Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05008 ATGGAGTTCGTTGTTCGCTTTAGTTCATGCATGCCGACGCTGTTCAGATTTCGTTTTAAGCTTCGATTCGCCATACTCGTGTTTGAGATTGTATTGGTATTAGCATGGTTGGAAATCAATGATGCGAAGACCCACGAACGACAATTTCAATGGGGAGGATTGGAAGAGAGGGTTGATAAAATTGCTTCACACTCTTGCATACATGACCAGATACTTGAACAGAGAAAGCGACCTGGTTACAAGGTGTATTCAGTTACCCCACAAGTTTACGAGCCTAGTCAACTGAAATCCCTTCAGCATAGAGGCAGGGCGTTACTTGGTGTATTGTCAACATCATCAAAGCCCCAAAAGGATGAAAAGCAACCTATTAGGATATATTTAAATTATGACGCCGTTGGCCACTCACCTGACAGGGATTGTCAAAAAGTTGGTGATATTGTTAAGCTCGGGGAGCCTCCAATCAATGCTGTTCATGGCTTGCCCTCTTGCAATCCTCTTTCTAATCCTCCAATCATGGGTGATTGTTGGTATAACTGCACTTCTGAAGATATATCAGGACAGGATAAAAAGCACCGCCTTCGCAAGGCGTTAGGTCAGACAGCTGACTGGTTTAGGCGAGCATTGGCTGTTGAGCCTGTCAAGGGGAACTTGCGATTGAGTGGATATTCTGCATGTGGACAAGACGGAGGTGTGCAGCTTCCTCGTGGATATGTTGAAGAGGGAGTCTCTGATGCCGACTTAGTTCTTTTGGTGACTACAAGACCTACAACTGGGAATACACTTGCTTGGGCAGTAGCATGTGAACGAGATCAATGGGGTCGTGCTATAGCTGGACATGTTAATGTTGCTCCTCGTCATTTGACAGCTGAGGCAGAGACTTTGCTATCAGCTACTTTGATACATGAGGTTATGCATGTTCTTGGTTTCGATCCTCATGCCTTCACTCATTTTAGAGATGAAAGGAGAAGACGTCGTAATAAGGTTACTGAACAAGTGATGGATGAAAAGATTGGACGTATAGTAACACGCGTGGTGCTTCCACGTGTTGTCATGCATTCGCGACATCATTATGCGGCGTTCTCAGGAAATTTTACTGGTTTAGAGCTGGAAGATGGTGGAGGACGTGGAACATCAGGGTCTCATTGGGAAAAAAGGCTTCTGATGAATGAGATCATGACTGGTTCTGTGGATACAAGATCCGTTGTTTCAAAAATGACCCTAGCTCTTCTAGAAGACAGCGGATGGTACAAAGCTAATTATAGCATGGCAGACCGTCTTGATTGGGGTCGCAACCAAGGCACTGAGTTTGTTACCTCCCCTTGCAATCTTTGGAAGGGAGCCTATCATTGCAACTCCACACAGTTTTCAGGTTGTACGTATAACAGAGAGGCAGAGGGTTACTGTCCCATTCTAACCTATAGCGGAGACCTTCCTCAGTGGGCTCAGTATTTTCCACAAGCTAATAAAGGTGGACAGTCTTCATTGGCTGATTATTGCACTTATTTTGTTGCATACTCTGATGGATCATGTACAGACACCAACAGTGCACGGGCACCTGATAGAATGCTAGGTGAAGTCCGAGGAAGCAACTCTAGGTGTATGGCCTCATCATTAGTGCGCACGGGATTTGTACGAGGTTCTATGACCCAAGGAAATGGTTGTTATCAGCACAGGTGTATCAACAACACTTTAGAGGTTGCTGTGGATGGTATGTGGAGAGCGTGTCCTCAGGCCGGCGGATCCATTCAGTTTGATGGCTTTAATGGTGCATTGATCTGTCCTGCATATTATGAGCTCTGTAACACAGACACAGTGGTTGACTCGAGGAAATGTCCCAATGCATGTAATTTCAATGGAGATTGTGTTGATGGAAGTTGCCAATGCTTTCTTGGATTTCATGGCCACGATTGCAGTAGACGATCCTGCCCCAGAAATTGCACTGGCAATGGCTTGTGTCTCAACAATGGAATATGTGAATGTAAACCCGGTTACACTGGCATTGACTGTTCCACTGCTGTTTGTGATGAGCAATGCAGCCTTCATGGTGGGGTTTGTGATAATGGAACTTGCGAATTCCGTTGTTCTGACTATGGAAAATACACCTGCCAGAACAGCTCCACACTCCTCTCGACTCTCTCAGTTTGCAAAAATGTGCTAGGAAATGATATTTCTGGGCAACATTGTGCACCCAGAGAACCTAGCATACTGCAGCAGCTGGAAGAAGTGGTTGTCATGCCCAACTACCACCGATTATTCCCTGGTGGTGCTAGAAAGTTATTTAATATATTTGGCAGCACCTACTGCGACGAGGCAGCTAAACGGCTTGCTTGCTGGATCTCAATCCAGAAGTGTGACGGAGACAACAGGCTACGAGTATGTCATTCTGCATGCCAATCGTATAATCTAGCGTGTGGAGTTTCACTGGACTGCAGGGACCAAACTCTTTTCAGCAAGGAGGAGGGAGAGGGTCAATGTACCGGTTCTGGTGAGATAAAGTTGTCATGGTTTAATAGATTGAGAAGCAGTTTTTCTTTGAGAAATAGTTCCTCAAATGAAATATTTGTAAGAAACAGGCAGCTTTAG 2583 0.4522 MEFVVRFSSCMPTLFRFRFKLRFAILVFEIVLVLAWLEINDAKTHERQFQWGGLEERVDKIASHSCIHDQILEQRKRPGYKVYSVTPQVYEPSQLKSLQHRGRALLGVLSTSSKPQKDEKQPIRIYLNYDAVGHSPDRDCQKVGDIVKLGEPPINAVHGLPSCNPLSNPPIMGDCWYNCTSEDISGQDKKHRLRKALGQTADWFRRALAVEPVKGNLRLSGYSACGQDGGVQLPRGYVEEGVSDADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFTHFRDERRRRRNKVTEQVMDEKIGRIVTRVVLPRVVMHSRHHYAAFSGNFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYKANYSMADRLDWGRNQGTEFVTSPCNLWKGAYHCNSTQFSGCTYNREAEGYCPILTYSGDLPQWAQYFPQANKGGQSSLADYCTYFVAYSDGSCTDTNSARAPDRMLGEVRGSNSRCMASSLVRTGFVRGSMTQGNGCYQHRCINNTLEVAVDGMWRACPQAGGSIQFDGFNGALICPAYYELCNTDTVVDSRKCPNACNFNGDCVDGSCQCFLGFHGHDCSRRSCPRNCTGNGLCLNNGICECKPGYTGIDCSTAVCDEQCSLHGGVCDNGTCEFRCSDYGKYTCQNSSTLLSTLSVCKNVLGNDISGQHCAPREPSILQQLEEVVVMPNYHRLFPGGARKLFNIFGSTYCDEAAKRLACWISIQKCDGDNRLRVCHSACQSYNLACGVSLDCRDQTLFSKEEGEGQCTGSGEIKLSWFNRLRSSFSLRNSSSNEIFVRNRQL 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05008 860 Gene3D Leishmanolysin , domain 2 316 441 - -
Vifa3g05008 860 PRINTS Leishmanolysin (M8) metalloprotease family signature 251 280 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vifa3g05008 860 PRINTS Leishmanolysin (M8) metalloprotease family signature 404 433 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vifa3g05008 860 FunFam leishmanolysin-like peptidase isoform X2 317 441 - -
Vifa3g05008 860 ProSitePatterns EGF-like domain signature 2. 658 669 IPR000742 -
Vifa3g05008 860 ProSitePatterns EGF-like domain signature 1. 658 669 IPR000742 -
Vifa3g05008 860 SMART egf_5 610 638 IPR000742 -
Vifa3g05008 860 SMART egf_5 641 670 IPR000742 -
Vifa3g05008 860 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 117 604 - -
Vifa3g05008 860 FunFam leishmanolysin-like isoform X2 505 600 - -
Vifa3g05008 860 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 58 820 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vifa3g05008 860 FunFam Peptidase M8, leishmanolysin 116 306 - -
Vifa3g05008 860 Gene3D - 116 306 - -
Vifa3g05008 860 Pfam Leishmanolysin 177 602 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vifa3g05008 860 Gene3D Leishmanolysin domain 4 505 600 - -
Vifa3g05008 860 Gene3D Laminin 610 639 - -
Vifa3g05008 860 Gene3D Laminin 641 672 - -
Vifa3g05008 860 Gene3D Leishmanolysin domain 3 444 503 - -
Vifa3g05008 860 FunFam leishmanolysin-like peptidase isoform X2 444 503 - -
Vifa3g05008 860 ProSiteProfiles EGF-like domain profile. 638 670 IPR000742 -
Vifa3g05008 860 Pfam EGF-like domain 642 669 IPR013111 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05008 Vifa-Chr3 1457320410 1457326999 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05008 3 1457320410 1457326999 Vifa3g05008 3 1457320410 1457326999 ECH
Vifa3g05008 3 1457320410 1457326999 Vifa2g04358 2 1281499743 1281507037 PCT