Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04996 ATGCCTATTGACACTCCTCTACTAGATAACAATGCCAACTCTTCTTCTAGTGTTGTCGATCACGAGGAAGAGACGCCATTGAAACTTGTTCACAAAGTTGCCGTGGAGTCGAAGAAGCTATGGCTAATTGCTGGTCCAGCAATCTTGACTGCTTTATCTCAGTTCTCAATTGGTGCATTCACTCAAACATTTGTTGGTCATGTTGGTACACTTGAACTTGCTGCTTTTTCGGTCGAAAACTCTGTCATTGCTGGATTCGCCTTCGGTTTCTTGTTGGGTATGGGAAGTGCATTGGAGACACTATGTGGACAAGCATTTGGTGCTGGTCATATAAGAATGTTGGGAGTTTACATGCAAAGATCATGGATAATCTTGTTGGTTACTGCCCTTTTGATGTTACCATTTTATATTTGGGCACCTCCACTCTTGAAGCTTGTTGGACAGGCTGATGATGTAGCAGATGCTGCTGGCCAATTTGCACTATGGATGATACCACAACTATTTGCATATGCAATGAACTTTCCAATCCAAAAGTTCTTACAATCACAAAGCAAAGTCTTTGTGATGTTATGGATATCAGCAGGTGTTTTGGTTTTCCATGTAATTTTCAGTTGGCTTCTAATCTTGAAACTTGAATGGGGCTTAGTTGGAGCTGCAATTTCTCTTAACTCATCATGGTGGCTCATTGTCATTGGTCAACTCTTGTACATTTTCATCACCAAATCAGATGGTGCTTGGAATGGATTCTCATGGCTCGCATTCGCAGATTTGTTTAGTTTTGTCAAACTTTCTATAGCTTCCGCTGTTATGTTATGCTTGGAGTTTTGGTATTTGATGATACTTGTACTAGTAGCAGGACATTTGAGAAACCCTGTAGTACCTTTGGATGCCATATCTATTTGTATGAACATAAATGGTTGGGATATAATGATTGCGCTAGGGTTTAACGCCGCAATAAGTGTGAGAATATCAAATGAACTTGGAGCTGGTAATTTTCGGGCTGCGAAATTCTCAGTGATAGTGGTTTCTCTGACATCGATATTCATAGGTGTTGTTGCAATGATCATAGTACTAACAACAAGAGATTATTTTCCTCAATTATTCACCTCAAGTGATGAAGTTGCTAAGCAAACAACTAAACTTGCTGCATTGCTTGGTGTCACTGTTCTTCTAAACAGCCTCCAACCAATCTTGTCTGGTGTTGCTGTTGGAGCTGGTTGGCAATCCCTTGTAGCATACATCAATCTTGGATGTTATTATGCAGTTGGATTACCAGCAGGCATATTATTAGGGTTCACATTTGGTTTAGGAGCCGAGGGTATTTGGTCGGGTCTGATTGGAGGCATAGTCATGCAAACCATAATCCTTATAGTCGTCACTTCGGTAACCAATTGGAAAAAAGAGGCCGATGAAGCAGAAAGTCGTGTGAAGAAGTGGGGAGGAACGAGTTCACATGAGAATTGA 1464 0.4092 MPIDTPLLDNNANSSSSVVDHEEETPLKLVHKVAVESKKLWLIAGPAILTALSQFSIGAFTQTFVGHVGTLELAAFSVENSVIAGFAFGFLLGMGSALETLCGQAFGAGHIRMLGVYMQRSWIILLVTALLMLPFYIWAPPLLKLVGQADDVADAAGQFALWMIPQLFAYAMNFPIQKFLQSQSKVFVMLWISAGVLVFHVIFSWLLILKLEWGLVGAAISLNSSWWLIVIGQLLYIFITKSDGAWNGFSWLAFADLFSFVKLSIASAVMLCLEFWYLMILVLVAGHLRNPVVPLDAISICMNINGWDIMIALGFNAAISVRISNELGAGNFRAAKFSVIVVSLTSIFIGVVAMIIVLTTRDYFPQLFTSSDEVAKQTTKLAALLGVTVLLNSLQPILSGVAVGAGWQSLVAYINLGCYYAVGLPAGILLGFTFGLGAEGIWSGLIGGIVMQTIILIVVTSVTNWKKEADEAESRVKKWGGTSSHEN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04996 487 CDD MATE_eukaryotic 36 469 IPR045069 GO:0042910|GO:1990961
Vifa3g04996 487 MobiDBLite consensus disorder prediction 1 20 - -
Vifa3g04996 487 PANTHER MULTIDRUG RESISTANCE PROTEIN 30 465 - -
Vifa3g04996 487 Pfam MatE 267 427 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa3g04996 487 Pfam MatE 46 206 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa3g04996 487 NCBIfam MATE family efflux transporter 46 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04996 Vifa-Chr3 1453811091 1453814334 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04996 3 1453811091 1453814334 Vifa3g04996 3 1453811091 1453814334 ECH