Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04993 ATGGCGAAATCGAGCGCCGACGATGCTGAACTCCGGCGAGCTTGCATCTCTGCAATTGAAGATCCTAAGCAGAAGATCATCTTATCACTCCGTGTCGCCAAGAGTCACGGGATCTTGGGAAAATCTTCCAAGCTTGGTCGTCAAATGGCCAAGCCTAGGGTTCTTGCTCTCTCCACATTAACAAAGGGTCAGACAACTACGGCTTTTCTTCGAGTTTTGAAGTATTCTACGGGAGGAGTTCTTGAACCTGCAAAACTATACAAGCTAAAGCATCTCTCAAAAGTAGAAGTTTTAACAAATGATCCCAGTGGATGTACATTTACATTGGGATTTGATAACCTTAGAAGCCAGAGTGTGGCTCCTCCGCAATGGACAATGCGCAATATTGATGACAGGAATCGTCTCCTTCTTTGCATCTTGACCATGTGTAAAGATGTTTTGGGTCGCCTTCCTAAAGTTGTTGGAATAGATGTTGTGGAGATGGCTCTCTGGGCTAAGGAAAATAGAGCCCCTGTTTCTGCTCAGAGTAATGTGCAAGATGGTGAACCTGTTGCTTCCATTATGACTGAGAGAGAGTTGAAAGTCAATGTTGAAAAAGACCTTGTCTCCCAGGCAGAAGAGGAGGACATGGAGGACATGGAGGCTCTTTTGGGAACTTATGTGATGGGTGTTGGTGAAGCAGAAGAATTTTCTGAAAGACTCAAGAGAGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCATGCCATTTTAGAAAGTGAGCCTTTGATAAATGAGGTGTTGTATGGGCTTGAAGCAGCAACGAATTGTGTAGAAGATATGGATGAATGGTTAGGCACATTCAATGTAAAACTCCGGCACATGAGAGAGGATATTGCATCAATAGAAACACGTAATAACAGCTTGCAAATGCAATCGGTAAATAACAAATCTCTCATTGAGGAGCTCGATACGCTTCTTGAGCGGTTGCGTGTCCCTTCTGAGTATGCAGCGTGTTTGACAGGAGGTTCATTTGATGAAGATCGGATGCTGCAAAATGTAGAGGCATGTGAGTGGCTCACTAGTGCCTTGCGTGGTCTTGAAGTGCCCAATATTGACCCTACTTATGCAAACATGAAAGCTGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCTTCTGAATTCTTGAGAAATTACTTTGCTAGTTTGGTGGACTTCATGATAAGTGATAAAAGCTACTTTTCTCAGCGGGGACAGTTGAAGAGGCCTGATCATGCTGACCTGCGGTACAAGTGCAGAACATATGCTCGTCTTCTTCAACATTTGAAGAGTCTTGACAAGAATTGCCTGGGTCCACTAAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTTCTTCGCCGGGAGGCCCGGGAGTTTGCAAATGAACTCCGTGCTAGTACAAAAGCATCTAGAAATCCAACTGTTTGGCTTGAAGGTTCAACCGGTTCTGGTCAGAATGTAAATGCTACTGATACTTCTACAGTCTCTGATGCATATGCAAAAATGCTCACAATCTTTATCCCACTTCTGGTGGATGAGAGTTCGTTTTTTGCACACTTCATGTGCTTTGAAGTTCCCACACTTGTTCCTCCTGGAGGTGTTGTTAACGGAAATAAAGCTGGTTATGACGATGATGATGATTTGGGAATTATGGACATTGATGAGAATGACAGCAAATCTGGAAAAAATTCTGCGGAGCTTGCAGCTTTAAATGAATCACTTCAGGATTTACTGGATGGAATTCAAGAAGACTTTTATGCTGTTGTGGATTGGGCATACAAGATTGATCCTTTACGCTGCATATCGATGCATGGAATAACAGAACGTTATCTTTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGTCTTTTGCTTGGCGACCTAGAGTCTCGGATATCTATGCAGTTCAGCCGTTTTGTTGATGAAGCTTGCCATCAAATTGAAAGAAATGAACGCAATGTTCGCCAAATCGGTGTCCTATCCTACATTCCCAGATTTGCAATCCTTGCAACTCGTATGGAGCAGTACATTCAGGGACAGTCTAGGGATTTGGTTGACCAAGCATATACAAAATTTGTCAGCGTAATGTTTGCAACCTTGGAAAAAATATCACAAACAGATCCGAAGTATGCAGATATTTTTCTTTTTGAGAACTATGCTGCCTTTCAGAATAGTTTGTACGACCTAGCCAACATCGTGCCCACTTTGGCCAAGTTTTATCATCAGGCCAGTGAAGCCTATGAACAAGCTTGCACACGTCATATTAGCATGATCATATACATTCAATTTGAACGCCTTTTCCTGTTTGCTCGAAGGATTGAGGAATTGATGTTCACCGTTGCACCTGAAGAGATACCTTTCCAGCTTGGGCTGTCAAAAATGGATCTTCGGAAAATGTTAAAATCCAGCTTATATGGGGTTGACAAGTCCATTAATGCGATGTATAAGAAACTACAAAAGAATTTGACTTCAGAAGAACTGCTACCTTCCTTATGGGACAAATGCAAGAAGGAGTTTCTTGACAAGTATGAAAGTTTTGCTCAACTTGTGGCTAAGATTTACCCTAATGAGACAATCCCATCTGTTGCAGAGATGAAAGACCTTTTAGGTAATAGCTAA 2661 0.4235 MAKSSADDAELRRACISAIEDPKQKIILSLRVAKSHGILGKSSKLGRQMAKPRVLALSTLTKGQTTTAFLRVLKYSTGGVLEPAKLYKLKHLSKVEVLTNDPSGCTFTLGFDNLRSQSVAPPQWTMRNIDDRNRLLLCILTMCKDVLGRLPKVVGIDVVEMALWAKENRAPVSAQSNVQDGEPVASIMTERELKVNVEKDLVSQAEEEDMEDMEALLGTYVMGVGEAEEFSERLKRELQALEAANVHAILESEPLINEVLYGLEAATNCVEDMDEWLGTFNVKLRHMREDIASIETRNNSLQMQSVNNKSLIEELDTLLERLRVPSEYAACLTGGSFDEDRMLQNVEACEWLTSALRGLEVPNIDPTYANMKAVKEKRAELEKLKSTFVRRASEFLRNYFASLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEGSTGSGQNVNATDTSTVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPTLVPPGGVVNGNKAGYDDDDDLGIMDIDENDSKSGKNSAELAALNESLQDLLDGIQEDFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRLLLGDLESRISMQFSRFVDEACHQIERNERNVRQIGVLSYIPRFAILATRMEQYIQGQSRDLVDQAYTKFVSVMFATLEKISQTDPKYADIFLFENYAAFQNSLYDLANIVPTLAKFYHQASEAYEQACTRHISMIIYIQFERLFLFARRIEELMFTVAPEEIPFQLGLSKMDLRKMLKSSLYGVDKSINAMYKKLQKNLTSEELLPSLWDKCKKEFLDKYESFAQLVAKIYPNETIPSVAEMKDLLGNS 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04993 886 PANTHER SEC3/SYNTAXIN-RELATED 49 876 - -
Vifa3g04993 886 Coils Coil 284 304 - -
Vifa3g04993 886 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Vifa3g04993 886 Coils Coil 224 251 - -
Vifa3g04993 886 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Vifa3g04993 886 Pfam Exocyst complex component Sec3 227 488 IPR019160 GO:0000145|GO:0006887
Vifa3g04993 886 Pfam Exocyst complex component Sec3 579 870 IPR019160 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04993 Vifa-Chr3 1451991692 1452019189 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04993 3 1451991692 1452019189 Vifa3g04993 3 1451991692 1452019189 ECH
Vifa3g04993 3 1451991692 1452019189 Vifa2g04351 2 1279621152 1279646568 PCT