Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04981 ATGCAAACTCTCTTTTCTTCTTCTTTAGAACCAGACCTATCTTTACACATATCTCCACCTTCTCTTTCAGATTCTCTTGTCCATAAAGGAATAACTAAAGCACTTTATCATCATAGTAATGATAATATATGTTCAATATCAACTACTTCTGATTCTGCTAGTGGTGAAAGTGAGTTAAGCCATGAAAATCCCTTCATCCATCATCATCATCATCGTGAGCCAACATTGAGATTAGGTTTTGGAAACTCAGATTTGATGAATCCACATCATCATAATCATCATCTTCATCATCATCATCATCAAACTCACGGTGTGTCAAGAAACTTCACTCAACCTCACATCTACGGTCGCGATTTCAAGCGTAATACACGAACCGGTGTCAAAAGAAGTGTTAGAGCTCCCAGAATGAGATGGACTACAACTCTTCATTCTCATTTTGTTCACGCTGTTCAACTTCTCGGTGGCCATGAAAGAGCAACACCAAAATCTGTGTTAGAGTTGATGAATGTGAAGGATCTAACCCTAGCACATGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAAACCACTGACAAATCAGGAGCAGGTCATGGGATGCTACAGACACAAGGGATTATTAATAATGTTCCTTTGCATGGATCAGCTTGTGAGAGAACAAATTTACCACAACAAAGGACATCATGGCAAGCATCAATAGAGACAAATACAAACAATACTGAAGAAAAATCTGAAATTGGTTTGACGTATTCACATTTCAAGGAAAATGATACCATGGTGAAATGTTCAGACTCTATGATTGACTTAGAATTCACACTTGGAAGACCAAATTGGGAAAAAGAAAATGGTGAATCATCAAGAGAATTACCTCTTCTTAAGTGTTAA 885 0.3751 MQTLFSSSLEPDLSLHISPPSLSDSLVHKGITKALYHHSNDNICSISTTSDSASGESELSHENPFIHHHHHREPTLRLGFGNSDLMNPHHHNHHLHHHHHQTHGVSRNFTQPHIYGRDFKRNTRTGVKRSVRAPRMRWTTTLHSHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKTTDKSGAGHGMLQTQGIINNVPLHGSACERTNLPQQRTSWQASIETNTNNTEEKSEIGLTYSHFKENDTMVKCSDSMIDLEFTLGRPNWEKENGESSRELPLLKC 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04981 294 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 11 281 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vifa3g04981 294 Gene3D - 133 190 - -
Vifa3g04981 294 FunFam Myb family transcription factor 132 190 - -
Vifa3g04981 294 NCBIfam myb-like DNA-binding domain, SHAQKYF class 134 187 IPR006447 GO:0003677
Vifa3g04981 294 SUPERFAMILY Homeodomain-like 131 187 IPR009057 -
Vifa3g04981 294 Pfam Myb-like DNA-binding domain 135 186 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04981 Vifa-Chr3 1447985298 1447988091 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa3g04981 Myb_DNA-binding 1.4e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04981 3 1447985298 1447988091 Vifa3g04981 3 1447985298 1447988091 ECH