Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04976 ATGGCTTGTAAGTGTAAGGGGAGCTTGAACATGAGAAAGCCTCAGTTCTATGAGGTGTATTCGTCTTCTTCTAGCTTTGAAACTCTGAAAATTCCAAATGGTTTCGTCTGTCAAATGGAAGGCAGGACATGTGGATTAGTTTCATTAACTGGTCCTAGTGGAAATACTTGGCAAGTTCGATTAGTTGAGCATGGCAATTATCTATTCTTCCATCATGGATGGTCAACATTTACGGAAGATCATCATTTAGAATATGGTGACCTTTTGGTTTTCAGATACGAGGGTGACTTGCATTTCACCGTGCAAGTGTTCGGTAAGAATGCATGTGAGAAAGAAGCAGCGTTTCATTCTGCATGCAATCTAAATTCATTCAATTTAGATAATATTGAAGGACTAAAAAGGGATGCCGAGGAGAGTTCTTCTTTGGATGTTGTTGGAGGTGTTCAGAAGAAAATGAGGCGTGGCACAGTTGAGAACCAGGAGCTTGAGCTGGCTATTGTTGGTAGAGAACTACCCCAGTGTGAGTTAGCTAAACCAATTCGAATGATCAGAGAAACAGAAGAAACCTACGGAGAATGTTCTGCTAGCGCTGTTCCTTTTCATGCAAAAAGTAGTAATGAAGATGAAGCCATTCTCAGCGGAGCTTCATTGTCAAAGCTATCAGCACATGATGAGAAAAAGATAGCACAGTCATTTACCTCCTCTTTTCCATATTTTGTTAAAATAATTAAAACCTTCAATGTCAGTGGTTCATATACTCTGAATATACCATATCAATTTTCGATGGCACATCTTCCAAACTGCAAGATAAAGATTATTCTTCATAATTTGAAGGGAGAACACTGGACTGTTAATTCTGTTCCAACAACTAGAGTGCATACTAGTCACACTATGTGTGGAGGATGGATGGCTTTTGTTCGAGGTAATAGTATAAAGGTTGGAGATGTTTGCATTTTCGAACTTATACGTGAGTGTGAATTACGTGTTCGCATCGCTGAGGTTGGAAAAGATGGGCTTGACTGCCAAGTTGGAAAACTAGCTTTTAGTATGCTCAGGGCAAGACATGATGTCGCTTGCCGAAAGACTGCCAAATATATGTCAAAAAGCCCTAAAGTCAGCTCAAAGTCTAGAAACAAAGTTGATCTATCAGATAAAAGGTTGTCAAAGATTGGTCAAGAAGCTGTTTTATCCGGTAGAGCTTCAAATACTTCGAAGAAGGTGGGTGTTTGCCCCAAGTCGAAAGCTGCCAAGAAAAAGTTGGCTGTACCGCGGAAACATAGTGTTGAAGATGAACTAAGCTCCCAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTCGACGAGCAAAGAGTGGCTGAAGCTTTTACTTCCGACTTTCCTAATTTTGTGAAAATCATGAAGATGTTCAATGTCAGCGGATCATACACTTTGAAAATTCCATATCAGTTCTCTGCTGCACATCTTCCCGCCGACAAAACAGAAGTTACTCTTCGCAATTCAAGAGGCGAATGTTGGACTGTGAACTCCGTTCCAGATGCTAATGGGAGAACAATTCACACCTTTTGTGGAGGATGGATGGCTTTTGTTCGTGATAATGACATAAATTTTGGAGACACATGCATCTTTGAGCTGGTTTCTCATTATGTGATGCAGGTTTATATATCTGGGGTTGGAAAGGAAGGTCTCGACCATCAAAATGGGCATGTGAAACTTATTACTAACTAG 1725 0.4046 MACKCKGSLNMRKPQFYEVYSSSSSFETLKIPNGFVCQMEGRTCGLVSLTGPSGNTWQVRLVEHGNYLFFHHGWSTFTEDHHLEYGDLLVFRYEGDLHFTVQVFGKNACEKEAAFHSACNLNSFNLDNIEGLKRDAEESSSLDVVGGVQKKMRRGTVENQELELAIVGRELPQCELAKPIRMIRETEETYGECSASAVPFHAKSSNEDEAILSGASLSKLSAHDEKKIAQSFTSSFPYFVKIIKTFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTMCGGWMAFVRGNSIKVGDVCIFELIRECELRVRIAEVGKDGLDCQVGKLAFSMLRARHDVACRKTAKYMSKSPKVSSKSRNKVDLSDKRLSKIGQEAVLSGRASNTSKKVGVCPKSKAAKKKLAVPRKHSVEDELSSQAKAGLRMLFALDEQRVAEAFTSDFPNFVKIMKMFNVSGSYTLKIPYQFSAAHLPADKTEVTLRNSRGECWTVNSVPDANGRTIHTFCGGWMAFVRDNDINFGDTCIFELVSHYVMQVYISGVGKEGLDHQNGHVKLITN 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04976 574 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Vifa3g04976 574 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 27 337 IPR044837 -
Vifa3g04976 574 Pfam B3 DNA binding domain 462 547 IPR003340 GO:0003677
Vifa3g04976 574 Pfam B3 DNA binding domain 21 106 IPR003340 GO:0003677
Vifa3g04976 574 Pfam B3 DNA binding domain 239 331 IPR003340 GO:0003677
Vifa3g04976 574 Gene3D - 8 109 IPR015300 -
Vifa3g04976 574 SMART B3_2 16 107 IPR003340 GO:0003677
Vifa3g04976 574 SMART B3_2 462 558 IPR003340 GO:0003677
Vifa3g04976 574 SMART B3_2 239 335 IPR003340 GO:0003677
Vifa3g04976 574 Gene3D - 220 335 IPR015300 -
Vifa3g04976 574 Gene3D - 447 557 IPR015300 -
Vifa3g04976 574 ProSiteProfiles B3 DNA-binding domain profile. 462 558 IPR003340 GO:0003677
Vifa3g04976 574 SUPERFAMILY DNA-binding pseudobarrel domain 232 332 IPR015300 -
Vifa3g04976 574 CDD B3_DNA 460 553 IPR003340 GO:0003677
Vifa3g04976 574 CDD B3_DNA 21 104 IPR003340 GO:0003677
Vifa3g04976 574 CDD B3_DNA 237 331 IPR003340 GO:0003677
Vifa3g04976 574 SUPERFAMILY DNA-binding pseudobarrel domain 455 556 IPR015300 -
Vifa3g04976 574 SUPERFAMILY DNA-binding pseudobarrel domain 22 112 IPR015300 -
Vifa3g04976 574 ProSiteProfiles B3 DNA-binding domain profile. 239 335 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04976 Vifa-Chr3 1446076002 1446080268 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa3g04976 B3 5.9e-13 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04976 3 1446076002 1446080268 Vifa3g04976 3 1446076002 1446080268 ECH