Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04940 ATGTCTACTAGGAATGAACAACATCAAACGGTTCCGCTTTCAGTTCTTTTGAAGCGTGAGTTGATGAATGAGAAAATTGAGAAGCCTGAGATTGCTCATGGTCAAGCTGGCCAAAGTAAGAAAGGAGAGGATTTAACGTTGCTGAAGGCTGAGTGCCAGAGGATGGTTTCTGATGGGGTCTATACATATTCTGTTTATGGGCTATTTGATGGACACAATGGATCTGCTGCTGCTATTTATTCTAAGGAGAATCTTCTAAATAATGTTTTAAGTGCAATTCCGCCTGATCTTAATGGAGACGAGTGGTTGGCAGCATTGCCTAGAGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAAGATTTTGCACAGAATGGACAAAAATCAGGAACAACTGTAACCTTTGTGATTATCGAAGGATGGGTTGTAACGGTTGCATCAGTTGGTGATTCCCGCTGCGTACTAGAATCTTCTGAAGGTGGGGTTTATTACTTGTCAGCAGATCATAGGCTAGAAACAAATGAAGAGGAGAGGGTTCGTATCACTTCTAGTGGGGGTGAGGTTGGTCGTTTAAATACAGGGGGAGGTGCAGAGGTTGGTCCCTTGAGATGTTGGCCCGGTGGCTTGTGCCTTTCACGATCTATTGGAGATATGGATATTGGTGAATTTGTTGTCCCTGTACCACATGTAAAACAAGTGAAGCTGTCCACTGCTGGAGGCCGGCTTGTTATCTGCAGTGACGGTGTTTGGGATTCTTTACCTGCAGAAGTGGCTCTTGATTGTTGTCGTGGCATGTCAGCAGAGGCTGCTGCACCACAGATTGTAAAAGTGAGATAA 834 0.4424 MSTRNEQHQTVPLSVLLKRELMNEKIEKPEIAHGQAGQSKKGEDLTLLKAECQRMVSDGVYTYSVYGLFDGHNGSAAAIYSKENLLNNVLSAIPPDLNGDEWLAALPRALVAGFVKTDKDFAQNGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSEGGVYYLSADHRLETNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDIGEFVVPVPHVKQVKLSTAGGRLVICSDGVWDSLPAEVALDCCRGMSAEAAAPQIVKVR 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04940 277 Pfam Protein phosphatase 2C 58 270 IPR001932 -
Vifa3g04940 277 PANTHER PROTEIN PHOSPHATASE 38 272 IPR015655 GO:0004722|GO:0006470
Vifa3g04940 277 SMART PP2C_4 22 277 IPR001932 -
Vifa3g04940 277 FunFam probable protein phosphatase 2C 12 33 277 - -
Vifa3g04940 277 SUPERFAMILY PP2C-like 35 275 IPR036457 -
Vifa3g04940 277 CDD PP2Cc 63 275 IPR001932 -
Vifa3g04940 277 Gene3D - 32 276 IPR036457 -
Vifa3g04940 277 ProSiteProfiles PPM-type phosphatase domain profile. 42 277 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04940 Vifa-Chr3 1433158002 1433161500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04940 1 275 PP2C-type Phosphatase Gene Family AT1G47380 77.455 5.93e-161 452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04940 3 1433158002 1433161500 Vifa3g04940 3 1433158002 1433161500 ECH
Vifa3g04940 3 1433158002 1433161500 Vifa5g02220 5 736596658 736601276 PCT