Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04923 ATGGATGTTTCAACTCTTCATAAGTTGGTGAAGACAGCAACATCCAAAGCTTTGGTTGTTAGATTCAATTTGTTCTGTCTTTCCATCTTCTTGATTGTTTATGCAACTCTTCTTCTTCGCCCTTCGTCTTCAATCTATTTCGAAAATGCTGCTTCACTTGTTAGATGTTCATTGAGAGAATGTCATCATAAGGGAGAAAATAGCCTAAAAATGAAGGCTATATTAGAAGAATTGCCAAAAGCAAAATCATTGAGTACAAAGAAGAATGGTACTAAGATAGAAGTACCGATATTTTTACAAGAAAAAATCGGTAAGGGAATGAAAATCGGAATCGTGAACATGAATGAAGATGATGACTTAAGTGAATGGAGCATACATGGAGAAACAATTACAATTAATTTCGACAAAGTATCACAATTTTTCAATTGGACGGATTTATTTCCCGAATGGATAGACGAAGAAGAAGAGAGCGACGTTCCAACATGTCCCGAAATACCTATGCCGGAATTTGAAGCATATAATAAAATGGATTTATTAGTTGCCAAGTTACCATGCAAGTATCCATTAGAAGGGTGGGGGAGAGAAGTTTTGAGGTTACAAGTTCATCTTATTGTGGCAAATATGATTGTGAAAAAGGGAAAGAAAGATTGGAAAATGAAGAGTAGGGTTTTATTTTGGAGTAAGTGTAGACCAATGTTGGAGATTTTTAGATGTGATGATTTGGTTATACATGAAGATGATTGGTGGTTTTATGAAGTTGATGTAAAGAAATTGGAGCAAAAAGTTGGTTTGCCTATTGGGTCATGTACTTTGGCTTTGCCTCTATGGGAACAAGGGATAGACAAAGTATACGACATATCCAAAATGGAACAAACTGTAAAAAGCAAAACAAGAGCAAAACATGAAGCTTATGCAACAGTTCTACACTCTTCAGAAAGCTATGTTTGTGGTGCAATAACACTAGCACAAAGCCTTCTAAAATCCGGAACCAAACGTGACCTTATACTCCTCATCGACGACTCCATCTCCGCTCGCAAACGCCATGCATTGGCTGCAGCCGGTTGGAAGATTCGAACCATCACCCGAATTCGAAACCCAAGAGCCGAGAATGGAACTTACAATGAGTATAACTATAGTAAATTTCGGTTGTGGCAACTAACCGATTATGAGAAAATAATTTTCATAGATTCCGATATTGTCGTGCTTCGAAATCTTGATATTTTCTTCAACTTTCCTCAAATGACTGCGACCGGTAATGATCAATCTATTTTCAACTCCGGGATCATGGTTATCGAGCCCTCAAATTGCACATTCAGTGTGCTCATGAGTCGACGCTTCGATATTGTTTCATACAACGGAGGCGATCAAGGATTCCTAAATGAGATATTTGTATGGTGGCATAGGCTTCCAAGGAGAGTAAACTATTTGAAGAATTTTTGGTCAAACACAACAGTTGAAGCAAGTGTGAAAAATGGTTTATTTGGGTCTGATCCTCCAAAACTATATGCAATTCATTACCTTGGTTTGAAGCCATGGAATTGTTATAGAGACTATGATTGTAATTGGGATGTGGAAAATCAAAGGGTTTATGCTAGTGATGTGGCACACGAACGTTGGTGGAAATTTCATGATGGAATGGACAGGAAGTTACAAGGTTTTTGTAGGTTGACAAGACAACGTAGGACTGAGTTGAATTGGGAAAGGAGAAGATCTAGGAAGATAGGGTCAGTTGATTATCATTGGAAGATTAATGTTACTGATCCTAGAAAATCTGGATCTCTTTTGATGGATTAG 1794 0.3763 MDVSTLHKLVKTATSKALVVRFNLFCLSIFLIVYATLLLRPSSSIYFENAASLVRCSLRECHHKGENSLKMKAILEELPKAKSLSTKKNGTKIEVPIFLQEKIGKGMKIGIVNMNEDDDLSEWSIHGETITINFDKVSQFFNWTDLFPEWIDEEEESDVPTCPEIPMPEFEAYNKMDLLVAKLPCKYPLEGWGREVLRLQVHLIVANMIVKKGKKDWKMKSRVLFWSKCRPMLEIFRCDDLVIHEDDWWFYEVDVKKLEQKVGLPIGSCTLALPLWEQGIDKVYDISKMEQTVKSKTRAKHEAYATVLHSSESYVCGAITLAQSLLKSGTKRDLILLIDDSISARKRHALAAAGWKIRTITRIRNPRAENGTYNEYNYSKFRLWQLTDYEKIIFIDSDIVVLRNLDIFFNFPQMTATGNDQSIFNSGIMVIEPSNCTFSVLMSRRFDIVSYNGGDQGFLNEIFVWWHRLPRRVNYLKNFWSNTTVEASVKNGLFGSDPPKLYAIHYLGLKPWNCYRDYDCNWDVENQRVYASDVAHERWWKFHDGMDRKLQGFCRLTRQRRTELNWERRRSRKIGSVDYHWKINVTDPRKSGSLLMD 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04923 597 CDD GT8_Glycogenin 302 546 - -
Vifa3g04923 597 Pfam Glycosyl transferase family 8 307 513 IPR002495 GO:0016757
Vifa3g04923 597 SUPERFAMILY Nucleotide-diphospho-sugar transferases 303 551 IPR029044 -
Vifa3g04923 597 FunFam Hexosyltransferase 299 550 - -
Vifa3g04923 597 PANTHER GLYCOGENIN SUBFAMILY MEMBER 194 590 - -
Vifa3g04923 597 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 300 550 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04923 Vifa-Chr3 1429348564 1429351635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04923 71 596 Glycosyltransferase AT4G33330 67.797 0.0 754
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04923 3 1429348564 1429351635 Vifa3g04923 3 1429348564 1429351635 ECH