Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04911 ATGGACGGTTACGATGGAACCGTTAGGCTTGGAGCTATCAACATGAAGTATGATCGCGGCGACTTTGACTCCGGCGTCGATGTGTCGGTTTCTTCTCCGGTTACTAAACAGAAAGCTGCCGCCGCTAAACAATTCATCGAGAATCATTACAAGAATTATCTTCAAGGATTGCAAGATCGCAAAGATAGACGTAGAGCGCTTCAAAGGAGAGTGCAGGAATCTCAATTACCAGTGGAAGAGCAGGAAGTGATGATGAGGAATTTAGAGCGCAAAGAAACCGAGTACATGAGGCTTCAAAGACGTAAAATTGGAATTGATGACTTTGAGCAATTAACAGTAATTGGTAAAGGTGCTTTCGGTGAGGTGAGGTTATGCCGTGGTAAAAGTACTGGAGAGATTTTTGCCATGAAGAAATTGAAGAAGTCAGAGATGCTTAGCCGTGGGCAGGTGGAACATGTTCGATCTGAGAGGAACTTGCTGGCAGAGGTTGATAGCCGATGCATAGTAAAACTTCATTATTCATTCCAAGATTCAGATTTCCTATATCTCATCATGGAATATTTACCTGGTGGCGACATTATGACACTGTTAATGAGAGAAGATATTCTTTCTGAAACTGTTGCTCGCTTCTACATTGCTGAAAGTATTCTTGCTATCCACTCAATACATCAACACAACTATGTACATAGGGATATAAAGCCAGATAACCTTATACTGGATAAAAATGGTCATTTGAAGCTTTCAGACTTCGGCTTATGCAAGACTCTTGATGACAAGTATTCAACAATTTTATTAGAAAATGAAGATTTTAATGGTCAAGAATCAACTAGTGAAACTGAAGGATATTTTGTCTCCCCTTGGTTGATGCCAAAGGAAAAATTACAGCAGTGGAAACGTAATCGCCGTGCATTGGCATATTCAACTGTTGGAACTCTTGACTACATGGCTCCTGAAGTTTTGCTCAAGAAGGGGTATGGAATAGAGTGTGATTGGTGGTCTCTTGGGGCAATCATGTATGAGATGCTTGTCGGATATCCTCCATTCTGTTCTGATGATCCAAGGATGACCTGCCGGAAGATTGTGAATTGGAAAGCATGCCTGAAATTCCCCGAAGAACCCAAGATATCAGCTGAAGCTAGGGATCTCATCTGTAGCTTATTATGTGATGTTGACACAAGACTAGGAACAAGGGGAGTAGACGAAATAAAGGCTCATCCATGGTTCAAGGGTATTCAGTGGGACATGCTTTATGAATTGGAAGCTGCATATAAACCTACAGTCATTGGAGACTTGGACACGCAAAACTTTGAGAAGTTTCCTGATGTAGGACCACCATCCGTAACAGAAACAATGGGACCTTGGAGAAAGATGTTGACATCCAAAGACACTAATTTCATAGGATATACTTTTAAGAAATCAGACATCCTTAAATCAATTGGGAGTACAGATGAAGATATCAGAGTAAATGGCTCATCAAAATCACCCTCTTTGATTTCCTTGTTAGGGCAAATGGATTTGCAAGATATTGTCATTACAGAAAGTGAACAGAAGCCAGAAACTTGA 1563 0.4082 MDGYDGTVRLGAINMKYDRGDFDSGVDVSVSSPVTKQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRRVQESQLPVEEQEVMMRNLERKETEYMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRGKSTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSETVARFYIAESILAIHSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKTLDDKYSTILLENEDFNGQESTSETEGYFVSPWLMPKEKLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLVGYPPFCSDDPRMTCRKIVNWKACLKFPEEPKISAEARDLICSLLCDVDTRLGTRGVDEIKAHPWFKGIQWDMLYELEAAYKPTVIGDLDTQNFEKFPDVGPPSVTETMGPWRKMLTSKDTNFIGYTFKKSDILKSIGSTDEDIRVNGSSKSPSLISLLGQMDLQDIVITESEQKPET 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04911 520 FunFam Non-specific serine/threonine protein kinase 79 191 - -
Vifa3g04911 520 FunFam Non-specific serine/threonine protein kinase 307 426 - -
Vifa3g04911 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vifa3g04911 520 CDD MobB_NDR_LATS-like 42 103 - -
Vifa3g04911 520 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 448 - -
Vifa3g04911 520 Gene3D Phosphorylase Kinase; domain 1 99 193 - -
Vifa3g04911 520 Gene3D Transferase(Phosphotransferase) domain 1 194 425 - -
Vifa3g04911 520 FunFam Non-specific serine/threonine protein kinase 192 259 - -
Vifa3g04911 520 CDD STKc_NDR_like 106 471 - -
Vifa3g04911 520 Pfam Protein kinase C terminal domain 429 470 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vifa3g04911 520 Coils Coil 78 101 - -
Vifa3g04911 520 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 480 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa3g04911 520 ProSiteProfiles Protein kinase domain profile. 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04911 520 SUPERFAMILY Protein kinase-like (PK-like) 83 457 IPR011009 -
Vifa3g04911 520 SMART pkinase_C_6 409 472 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa3g04911 520 Pfam Protein kinase domain 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04911 520 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Vifa3g04911 520 SMART serkin_6 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04911 Vifa-Chr3 1427371979 1427378815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04911 1 508 AGC Kinase Gene Family AT5G09890 77.539 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vifa3g04911 Pkinase 3.3e-64 CL0016