Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04907 ATGGCGCAGATTCAGGTTCAGCATCAAACTCCGGTCGCTGTTCCGGCACCGTCGAACGGCGTCATTGCCGCTCCGAACGCGAACCAGTTTGTTACGACGTCGTTGGTTTGTAGGGATTTGGCTACTCGTCGTTCGCTCGGTTATGGTTATGTTAATTTCAGTAACCCTCAGGATGCGGCTAGGGCTTTGGATGTGCTGAATTTTACTCCGCTGAACAACAAGTCTATTAGGGTTATGTATTCTCACCGGGATCCTAGTATTCGGAAGAGTGGCACTGCTAATATTTTTATCAAGAATTTGGATAAGGCAATTGATCACAAAGCTTTGCATGATACTTTTACTACTTTTGGACAAATTCTGTCTTGCAAAATAGCCACCGATGGTTCTGGCCAGTCTAAAGGCTATGGTTTTGTCCAATTTGAGAGTGCTGAATCTGCTCAGAATGCTATTGATAAGTTGAATGGAATGCTGATCAATGACAAACAGGTGTTTGTGGGTCATTTCCTACGTAAGCAGGATAGAGATAGTGTTCTTAGTAAGACAAGATTTAATAATGTCTATGTGAAGAACCTATCAGAGTCATTTTCGGAAGAAGACTTGAGGGTTACTTTTGGAGAATATGGGACCATTACTAGTGCTGTTTTGATGAGAGATGCAGATGGTAGGTCAAAGTGTTTTGGTTTTGTCAATTTTGAAAGTCCAGATGATGCTGCTAAAGCTGTTGAGGCTTTGAATGGAAAGAAAGTTGATGACAAGGAGTGGTATGTGGGAAAAGCCCAGAAAAAATCTGAACGTGAGCTTGAGCTGAAAGGACGGTTCGAGCAGACTGTTAAAGAATCTGTAGACAAATATCAGGGTGTGAACTTGTATCTCAAGAACTTGGATGATTCTATTAGTGATGAAAAACTCAAAGAAATTTTCTCCGAGTTTGGCACAATAACCTCATACAAGATTATGCGAGACCCAAATGGAGTTAGCAGAGGTTCTGGATTTGTTGCATTTTCAACTCCGGAGGAAGCATCAAGAGCTCTTGGAGAAATGAATGGTAAAATGATTGTTAGCAAACCTCTTTATGTTGCTGTTGCACAGAGAAAGGAGGATAGAAGAGCAAGGCTGCAGGCACAATTTTCACAAATGAGGCCGGTTGCAATTACTCCTTCTGTTGCACCCCGAATGCCACTCTACCCTCCCGGTGCTCCTGGTCTTGGACAACAGTTTATGTATGGTCAAGGACCTCCAACCATGATGCCACCACAAGCTGGATTTGGATATCAGCAGCAGCTTGTTCCTGGGATGAGACCTGGTGGTGGTCCTATGCCAAATTACTTTGTTCCTATGGTTCAGCAGGGACAACAAGGTCAGCGCCCTGGTGGACGTCGTGGAGGAGGTCCTGTTCAACAATCCCAGCAGCCAGTTCCAATGATTCAGCAACAGATGCTTCCAAGGCAACGTGTTTATCGCTACCCTTCTGGCCGCAACAACATTCAGGATGCCCCTGTGCAAAACATAGCTGGTGGAATGATGTCCTATGACATGGGAGGTCTGCCACTCCGTGATGTTGTAGCACCTATGCCAATTCATGCTTTAGCTACCGCACTTGCAAATGCTCCTCCTGAACAGCAGAGGACGATGCTTGGGGAGGCTTTGTATCCGCTTGTAGATCAGCTAGAACATGATTCAGCAGCCAAGGTTACTGGCATGCTTTTGGAGATGGACCAGCCTGAAGTATTGCATCTGATTGAATCACCGGATGCTCTCAAGGCCAAAGTTGCTGAAGCCATGGATGTGCTGAGAAATGTTGCTCAACAAGGTAATAGCCCGACGGATCAACTAGCTTCACTATCTCTCAACGACAATCTTGCATCTTAG 1869 0.4505 MAQIQVQHQTPVAVPAPSNGVIAAPNANQFVTTSLVCRDLATRRSLGYGYVNFSNPQDAARALDVLNFTPLNNKSIRVMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFTTFGQILSCKIATDGSGQSKGYGFVQFESAESAQNAIDKLNGMLINDKQVFVGHFLRKQDRDSVLSKTRFNNVYVKNLSESFSEEDLRVTFGEYGTITSAVLMRDADGRSKCFGFVNFESPDDAAKAVEALNGKKVDDKEWYVGKAQKKSERELELKGRFEQTVKESVDKYQGVNLYLKNLDDSISDEKLKEIFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFMYGQGPPTMMPPQAGFGYQQQLVPGMRPGGGPMPNYFVPMVQQGQQGQRPGGRRGGGPVQQSQQPVPMIQQQMLPRQRVYRYPSGRNNIQDAPVQNIAGGMMSYDMGGLPLRDVVAPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQGNSPTDQLASLSLNDNLAS 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04907 622 FunFam Polyadenylate-binding protein 87 174 - -
Vifa3g04907 622 Gene3D - 25 86 IPR012677 -
Vifa3g04907 622 FunFam Polyadenylate-binding protein 521 603 - -
Vifa3g04907 622 SMART poly_2 537 600 IPR002004 GO:0003723
Vifa3g04907 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 364 IPR000504 GO:0003723
Vifa3g04907 622 MobiDBLite consensus disorder prediction 449 471 - -
Vifa3g04907 622 FunFam Polyadenylate-binding protein 175 269 - -
Vifa3g04907 622 Gene3D - 174 270 IPR012677 -
Vifa3g04907 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 83 IPR000504 GO:0003723
Vifa3g04907 622 SUPERFAMILY RNA-binding domain, RBD 32 174 IPR035979 GO:0003676
Vifa3g04907 622 SMART rrm2_1 185 257 IPR003954 GO:0003676
Vifa3g04907 622 SMART rrm2_1 288 360 IPR003954 GO:0003676
Vifa3g04907 622 SMART rrm2_1 94 166 IPR003954 GO:0003676
Vifa3g04907 622 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 34 598 IPR006515 GO:0003723
Vifa3g04907 622 Pfam Poly-adenylate binding protein, unique domain 533 597 IPR002004 GO:0003723
Vifa3g04907 622 PANTHER RNA BINDING PROTEIN 27 395 - -
Vifa3g04907 622 Gene3D - 521 603 - -
Vifa3g04907 622 Gene3D - 271 373 IPR012677 -
Vifa3g04907 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 170 IPR000504 GO:0003723
Vifa3g04907 622 SUPERFAMILY RNA-binding domain, RBD 184 368 IPR035979 GO:0003676
Vifa3g04907 622 CDD RRM3_I_PABPs 183 262 - -
Vifa3g04907 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 261 IPR000504 GO:0003723
Vifa3g04907 622 Gene3D - 87 173 IPR012677 -
Vifa3g04907 622 FunFam Polyadenylate-binding protein 270 375 - -
Vifa3g04907 622 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 525 602 IPR002004 GO:0003723
Vifa3g04907 622 CDD RRM4_I_PABPs 286 364 - -
Vifa3g04907 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 254 IPR000504 GO:0003723
Vifa3g04907 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 162 IPR000504 GO:0003723
Vifa3g04907 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 77 IPR000504 GO:0003723
Vifa3g04907 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 357 IPR000504 GO:0003723
Vifa3g04907 622 SUPERFAMILY PABC (PABP) domain 469 613 IPR036053 GO:0003723
Vifa3g04907 622 SMART rrm1_1 288 360 IPR000504 GO:0003723
Vifa3g04907 622 SMART rrm1_1 3 79 IPR000504 GO:0003723
Vifa3g04907 622 SMART rrm1_1 185 257 IPR000504 GO:0003723
Vifa3g04907 622 SMART rrm1_1 94 166 IPR000504 GO:0003723
Vifa3g04907 622 CDD RRM2_I_PABPs 91 167 IPR045305 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04907 Vifa-Chr3 1424948500 1424952933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04907 1 617 Eukaryotic Initiation Factors Gene Family AT4G34110 64.815 0.0 810
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04907 3 1424948500 1424952933 Vifa3g04907 3 1424948500 1424952933 ECH