Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04895 ATGGAAGCTGGGGAGGATTGTTGTGTCAAAGTTGCGGTTCATGTTCGGCCGTTAATCAATGATGAGAAGGTTCAGGGGTGTAAAGATTGTGTAACTGTTGTTTCTGGGAAGCCTCAGGTACAAATTGGCGCTCATTCCTTTACATTTGATCATGTTTATGGGAGTACTGGTTCTCCCTCATCTGCCATGTTTGATGAATGTGTTGCTTCCCTTGTTGGAGGTCTGTTCCAAGGGTATAATGCCACGGTTCTCGCGTATGGTCAGACAGGTTCTGGGAAAACATACACAATGGGCACTGGCTCTAAAGATTATTATCAAACAGGAATAGTACCCCAAGTTATGAGTGTTTTGTTTAGTAAAATCGAGACCTTAAAGCATCAAATCGAATTTCAGCTGCATGTTTCCTTTATCGAGATTCTTAAAGAAGAAGTAAGAGATTTGCTGGACCCGTCCTCTATGAGCAAACCAGAAACTGCAAATGGACATGCAGGGAAAGCGCCTATTCCTGAACAAGGATCGCTAAGTAGAGCAACTGGGAGCACAAATATGAACAACCAATCCAGTCGTTCACATGCCATCTTCACCATCACATTAGAGCAGATGCGGAAGCTCAACAATCCTAGTGAGATTGGTTTAAATGATACTATGAACGAAGAGTATCTTTGTGCCAAGTTGCACTTAGTAGACCTTGCTGGATCAGAACGAGCTAAACGAACAGGGTCTGATGGTTTGCGTTTTAAAGAAGGAGTTCACATTAACAAAGGCCTACTAGCACTTGGCAATGTGATTAGTGCACTTGGTGATGAAAAAAAGAGAAAAGAAGGCGCTCATGTTCCTTATAGGGATAGTAAACTTACTAGGCTTTTACAGGATTCACTTGGTGGTAACAGCAGAACTGTTATGATAGCTTGCATAAGTCCTGCCGATATCAATGCTGAGGAAACCCTTAACACTTTGAAGTATGCAAATCGTGCACGCAATATCCAAAATAAGCCTGTTGTCAATAGAGATCCAATGTCCAATGAGATGCTTAAAATGCGACAACAACTAGAGCATTTGCAAGCAGAACTTTGTACTCGTTCTGGTGGCTCGTCCAAGGAGGTTCAGGTCCTCAAGGAAAGAATTTCTTGGCTTGAAGCAGCTAATGAAGATCTTTGCCGTGAACTTCATGAATATCGTAGCAGATGCTCGGTTGTGGCACAAAGTGAAAAGGATGCTTATGACGGTAGCATGTGCAATGTAAAGACAGATGGGCTTAAAAGGGGCTTACCGATCACAACTCTTGATTATCCAATGAGTGAAACAACGGGGGATTCAAGGGAAATTGAAGAAGTTGCTAAAGAATGGGAGCATACACTTCTACAAAATAGTATGGACAGAGAGTTACACGAATTGAACAAACGCTTGGAGCAGAAAGAGTCTGAGATGAAGCTATTTGGATCATCGGATGCTGAAACACTCAAGCAGCACTTTGGAAGGAAGATCGTGGAACTTGAGGATGAGAAGAGAACTGTCCAGCAAGATAGGGATCGTCTTTTAGCTGAAGTTGAAAATCTTGCTGCCGGTTCCGATGGACAAACACACAGATCAGATGATATCCATGCCCAAAAATTGAAAGCACTTGAAGCTCAGATTCTGGACCTCAAGAAGAAACAGGAGAGCCAGGTTCAGCTTCTAAAGCAAAAGCAAAAAAGTGATGAAGCAGCGAAGCGCTTGCAAGATGAAATACAATCTATCAAAGCCCAAAAGGTTCAATTGCAACAAAAAATAAAACAAGAAGCAGAACAGTTTCGGCAGTGGAAAGCTTCTAGAGAGAAAGAGCTGCTTCAATTAAAGAAGGAAGGAAGAAGAAACGAGTTTGAAAGGCATAAGCTGCAAGCTCTAAATCAGCGCCAGAAAATGGTCCTTCAGCGAAAGACTGAGGAAGCTGCAATGGCCACCAAGAGGTTAAAGGAATTGTTAGAAGCTCGTAAGTCTTGCAGCCGAGACACTTCAGTTAACGGGAGTGGAGCAAATAAACAGAGTAATGAAAAATCCTTGCAACGGTGGCTTGATCACGAGCTAGAAGTCATGGTAAAAGAGCATGAAGTTCGTTTTGAATATGAGAAGCAGAGCCAAGTGCGAGCTGCTCTTGGAGAGGAGTTAGCGATGCTGAAACAAGTAAACGAATTTGCTGCTAATGGTCTCAGTCCTCCAAGGGGGAAGAACGGATTTGCTAGAGCATTCTCCATGTCACTGAATGCAAGAATGGCCAGAATAGCTTCACTGGAGAACATGCTGAGCATATCATCTAATTCACTTGTGGCAATGGCTTCTCAACTATCTGAAGCAGAAGAACGAGACAGGGCCTTCAGTAACCGTGGACACTGGAACCAGTTGCGCTCAATGGGAGAAGCCAAGGTTTTGCTTCAATATATGTTTAATTCTCTTGCAGACACGAGGTGTCAACTGTGGGAGAAAGATATGGAGATAAGAGAAATGAAAGATCAAATCAGGGAACTTGTAGGTCTATTACGGCAAAGTGAGATCAAGAGAAAGGAAGTTGAGAAGGAACTAAAAGTGAGAGAGCAAGATGTTGCAACCACATTGGCCAAGCCAGCTTCGGGAAACCCCCCAAATTCACTGAAGCACTATGTCGAAGACATCAAGGAACCTTTATCTCCTGAGTCTGTGCCGGCATCGAAACAGCTCAAATATACACCAGGCATTGCTAATGGTCAAACGAGGGAATCAGCGGCATTCATAGATCAAAGTAGAAGGATGGTACCCATTGGGCAACTGTCAATGAAAAAGCTAGCAATTGTCGGACAGGCTTCTGGCAAGCTATGGAGGTGGAAAAGGAGCCATCATCGGTGGCTACTACAATTCAAATGGAAGTGGCAGAAGCCGTGGAGACTTTCTGAGCGAATTCGACACAGTGATGAAACAATCATGAGATCAAAGCCACGTTCACAGGCTTTGCCTCAGATTATGTGA 2976 0.4341 MEAGEDCCVKVAVHVRPLINDEKVQGCKDCVTVVSGKPQVQIGAHSFTFDHVYGSTGSPSSAMFDECVASLVGGLFQGYNATVLAYGQTGSGKTYTMGTGSKDYYQTGIVPQVMSVLFSKIETLKHQIEFQLHVSFIEILKEEVRDLLDPSSMSKPETANGHAGKAPIPEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLNNPSEIGLNDTMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGAHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSNEMLKMRQQLEHLQAELCTRSGGSSKEVQVLKERISWLEAANEDLCRELHEYRSRCSVVAQSEKDAYDGSMCNVKTDGLKRGLPITTLDYPMSETTGDSREIEEVAKEWEHTLLQNSMDRELHELNKRLEQKESEMKLFGSSDAETLKQHFGRKIVELEDEKRTVQQDRDRLLAEVENLAAGSDGQTHRSDDIHAQKLKALEAQILDLKKKQESQVQLLKQKQKSDEAAKRLQDEIQSIKAQKVQLQQKIKQEAEQFRQWKASREKELLQLKKEGRRNEFERHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKSCSRDTSVNGSGANKQSNEKSLQRWLDHELEVMVKEHEVRFEYEKQSQVRAALGEELAMLKQVNEFAANGLSPPRGKNGFARAFSMSLNARMARIASLENMLSISSNSLVAMASQLSEAEERDRAFSNRGHWNQLRSMGEAKVLLQYMFNSLADTRCQLWEKDMEIREMKDQIRELVGLLRQSEIKRKEVEKELKVREQDVATTLAKPASGNPPNSLKHYVEDIKEPLSPESVPASKQLKYTPGIANGQTRESAAFIDQSRRMVPIGQLSMKKLAIVGQASGKLWRWKRSHHRWLLQFKWKWQKPWRLSERIRHSDETIMRSKPRSQALPQIM 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04895 991 Coils Coil 636 656 - -
Vifa3g04895 991 SMART kinesin_4 6 336 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g04895 991 Coils Coil 455 475 - -
Vifa3g04895 991 PRINTS Kinesin heavy chain signature 278 299 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g04895 991 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g04895 991 PRINTS Kinesin heavy chain signature 224 242 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g04895 991 PRINTS Kinesin heavy chain signature 181 198 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g04895 991 Coils Coil 495 515 - -
Vifa3g04895 991 Coils Coil 824 858 - -
Vifa3g04895 991 ProSitePatterns Kinesin motor domain signature. 223 234 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vifa3g04895 991 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 359 IPR027417 -
Vifa3g04895 991 Coils Coil 538 603 - -
Vifa3g04895 991 CDD KISc_KIF4 7 329 - -
Vifa3g04895 991 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 1 984 IPR027640 GO:0003777|GO:0007018
Vifa3g04895 991 MobiDBLite consensus disorder prediction 658 679 - -
Vifa3g04895 991 MobiDBLite consensus disorder prediction 150 188 - -
Vifa3g04895 991 MobiDBLite consensus disorder prediction 660 678 - -
Vifa3g04895 991 Pfam Kinesin motor domain 170 328 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g04895 991 Pfam Kinesin motor domain 15 156 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g04895 991 ProSiteProfiles Kinesin motor domain profile. 8 328 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa3g04895 991 Coils Coil 368 388 - -
Vifa3g04895 991 Gene3D Kinesin motor domain 7 167 IPR036961 -
Vifa3g04895 991 MobiDBLite consensus disorder prediction 173 188 - -
Vifa3g04895 991 Gene3D Kinesin motor domain 168 370 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04895 Vifa-Chr3 1420632066 1420638484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04895 9 354 Miscellaneous Gene Families AT5G06670 37.736 5.27e-53 196