Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04886 ATGGGACAAGCAGCTTCCACTGCCGCCGTCGTCAGCCGTCGGGAAAGACACACCAACACCGCGAAAACCACTAGATCCACCTCCTTGGTTTCTCCGATGAACGCTACCGGAGAAGACGATGAAGATATTATAGATCCGGTTAACCGTGGAATCTCCGATTATATATCAGATCTACCGGATGAGTGTTTAGCGATTGTGTTTCAGTCGTTGAGCCCCGGTGACCGGAATCAGTGTTCGCTCGTTTGCCGGCGGTGGTTGACTGTTGAAGGACAGAGTCGGCAGCGGTTGTCGTTGAACGCGAAGCTGGATCTGCTTCCGGTGATTTCGTCTCTCTTCAATCGATTCGATTCGGTGACGAAACTCGCTTTGAAATGCGATCGTAGATCTGTGAGTATAAGAGATGAAGCTCTTGTTATAATCTCTGAGCGTTGTCCTAATCTCACGCGCCTCAAGCTCCGCGCGTGTAGGGAGTTAACGGATGCTGGAATGGAAACTTTCGCGAAGAATTGTAGAGGATTGAAGAAGTTATCGTGTGGATCTTGTACTTTTGGATCTAGAGGGATGAACGCGGTGCTGGATAATTGTGCTGCTCTCGAGGAACTGTCGGTGAAGCGGCTCCGGGGGATTGCTGAGACTGCGGTGGCGGAGCCGATTGGACCGGGTGTAGCGGCGGCGTCGCTGAAGACAATTTGTTTGAAGGAGCTTTATAATGGACAGTGTTTTGGTTCGCTGATTCTTGGTGCGAAGAACCTCAAGACTTTGAAGCTTTTTCGATGCTCGGGCGATTGGGACACGCTGTTTACGCTAATGGCGGAGCGGGTCACGAGTATGATTGCTGATGTTCATTTTGAGAGGCTTCAGATTAGTGATATTGGGTTGCAAGCTATTTCACATTGTTCGAATTTGGAGATTTTGCATCTTGTGAAGACACCTGAGTGCACTGATTTGGGACTTGTTGCAATTGCCGAACGGTGTAAGTTGTTAAGGAAGCTTCACATTGATGGATGGAAAGCGAATCGGATTGGCGATGAAGGGTTAATAGCGGTTGCTAAGTTTTGCCCTAATCTACAAGAATTGGTGCTTATTGCTGTTAACCCTACAAAAGCGAGTTTGGAAATGTTGGCATCTAATTGCCCTAATCTAGAGAGGTTGGCTTTGTGTGCAAGTGATACTGTTGGTGATCCTGAGATATCATGCATTGCTGCCAAGTGTTTAGCTTTAAAGAAGCTTTGCATTAAGAGCTGTCCGGTTTCTGATCATGGAATGGAAGCTTTGGCGAACGGGTGTCCCAATTTGGTGAAAGTGAAGGTTAAGAAATGTAAAGGTGTTACCCCTGAGGGAGGAGATTGGTTGAGGCTAACTCGGGGATCAGTTGCTGTTAATTTGGATACTGTTGAAGCAGAACTTCAAGATGCTAGTGATGGTGGAGCGCAAGACAATGTTATAGAGTTTCCGCCAATGCCCGTCTGTGCAGCAGCATCTACATCCGGAAATATTGCGTCAAGAAGTACTACTCGATCGGCTTCTTTCAAGCAAAGGTTAGGACTTTTTTCTGGGAGGAAAATAGTGGCTAGTACTTTGAGAAGATGGTCAGGTGGTAGCACTAGTGCCCGCCATGGTTAG 1623 0.475 MGQAASTAAVVSRRERHTNTAKTTRSTSLVSPMNATGEDDEDIIDPVNRGISDYISDLPDECLAIVFQSLSPGDRNQCSLVCRRWLTVEGQSRQRLSLNAKLDLLPVISSLFNRFDSVTKLALKCDRRSVSIRDEALVIISERCPNLTRLKLRACRELTDAGMETFAKNCRGLKKLSCGSCTFGSRGMNAVLDNCAALEELSVKRLRGIAETAVAEPIGPGVAAASLKTICLKELYNGQCFGSLILGAKNLKTLKLFRCSGDWDTLFTLMAERVTSMIADVHFERLQISDIGLQAISHCSNLEILHLVKTPECTDLGLVAIAERCKLLRKLHIDGWKANRIGDEGLIAVAKFCPNLQELVLIAVNPTKASLEMLASNCPNLERLALCASDTVGDPEISCIAAKCLALKKLCIKSCPVSDHGMEALANGCPNLVKVKVKKCKGVTPEGGDWLRLTRGSVAVNLDTVEAELQDASDGGAQDNVIEFPPMPVCAAASTSGNIASRSTTRSASFKQRLGLFSGRKIVASTLRRWSGGSTSARHG 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04886 540 MobiDBLite consensus disorder prediction 1 42 - -
Vifa3g04886 540 Gene3D - 54 88 - -
Vifa3g04886 540 ProSiteProfiles F-box domain profile. 52 88 IPR001810 GO:0005515
Vifa3g04886 540 FunFam F-box protein SKIP2 90 472 - -
Vifa3g04886 540 PANTHER UNCHARACTERIZED 56 463 - -
Vifa3g04886 540 SUPERFAMILY F-box domain 52 87 IPR036047 GO:0005515
Vifa3g04886 540 Pfam F-box domain 55 86 IPR001810 GO:0005515
Vifa3g04886 540 SMART LRR_CC_2 170 194 IPR006553 -
Vifa3g04886 540 SMART LRR_CC_2 144 169 IPR006553 -
Vifa3g04886 540 SMART LRR_CC_2 299 324 IPR006553 -
Vifa3g04886 540 SMART LRR_CC_2 429 456 IPR006553 -
Vifa3g04886 540 SMART LRR_CC_2 404 428 IPR006553 -
Vifa3g04886 540 SMART LRR_CC_2 378 403 IPR006553 -
Vifa3g04886 540 SMART LRR_CC_2 325 352 IPR006553 -
Vifa3g04886 540 Pfam Leucine Rich repeat 144 167 IPR001611 GO:0005515
Vifa3g04886 540 CDD F-box_AtTIR1-like 55 93 - -
Vifa3g04886 540 Gene3D Ribonuclease Inhibitor 89 474 IPR032675 -
Vifa3g04886 540 SUPERFAMILY RNI-like 105 464 - -
Vifa3g04886 540 FunFam F-box/LRR-repeat protein 3 isoform X1 54 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04886 Vifa-Chr3 1418703025 1418704647 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04886 3 1418703025 1418704647 Vifa3g04886 3 1418703025 1418704647 ECH