Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04856 ATGGAACTTATAGGATCTTTCCCTGATGGTGAATGGGATTTCTTTAGCAAAATGTTTGCTAATGAGGATCATGAACACTACACTCAACAATTTCTTGATCAAAATTCTCTTCTTCTTGATGATGGATTGAACAATGGATCACAATCCACATTTTCCTCCGCGGAAATCGGTGAAAAAGAGTGTATGTTTTATTCTTTTGATCATGCTAATATCTCAAACTCACATTATATATCTCAATCTCAAGAGAATAGTTATAGTAGCAATTGTAGTGCTAATGATGAAACAAATTACTATTTTAGTTATCCTAATCAAGTACTAGCAAATAATATGAATAGTTCTACTCCCATGGATGAGAAATTTTTTGCTTCTTTTGTCACACCCTTTAATGAGATTGTAATGGAAGAGAATGTGAAATTGAATGAAGATGCTATTGGAAGTGGTGATCATATTTTGGAAAAAAATGATTATTTTAATACTCAAATAATGGAACAACATGTTGATTTTCCAAACAACCATGAGATGCAAATGCAACTCAAAAGGAAACTCAATGTGGTAGAACTTGAAGTTCCTTTTGAAGAAAAAGTTAACAACAAATCAAAGAATCCGAAGAAAAAAATTCGTGTCTCAAAAGATGGCATGAAAAATGTAAGGTCTAAGAAGAAACTTATTAGTAGCAATGAAGAGGAGAATGAAGAGATTAATAATAGCTCAAGTAGTAACATTTCTGAGGATGAAAATGGTTCTCAAGAAAATAGTAGAGGAACAACTCTCAACTCAAATGGGAAAACAAGAGCTAGTAGAGGATCAGCAACAGATCCACAAAGTCTATATGCAAGGAAAAGAAGAGAGAGGATAAATGAGAGACTAAGAATTTTACAGAAACTTGTACCAAATGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAAGCAGTCAATTATGTGAAATTTTTGCAAGTTCAAATCAAGCTTTTGAGTTCAGATGATATGTGGATGTATGCACCACTTGCTTATAATGGACTTGACATTGGACTCACTCTCAATCTCAAAGGCTCTTCACCACTATGA 1068 0.3315 MELIGSFPDGEWDFFSKMFANEDHEHYTQQFLDQNSLLLDDGLNNGSQSTFSSAEIGEKECMFYSFDHANISNSHYISQSQENSYSSNCSANDETNYYFSYPNQVLANNMNSSTPMDEKFFASFVTPFNEIVMEENVKLNEDAIGSGDHILEKNDYFNTQIMEQHVDFPNNHEMQMQLKRKLNVVELEVPFEEKVNNKSKNPKKKIRVSKDGMKNVRSKKKLISSNEEENEEINNSSSSNISEDENGSQENSRGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVNYVKFLQVQIKLLSSDDMWMYAPLAYNGLDIGLTLNLKGSSPL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04856 355 SMART finulus 275 324 IPR011598 GO:0046983
Vifa3g04856 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 334 IPR036638 GO:0046983
Vifa3g04856 355 MobiDBLite consensus disorder prediction 229 273 - -
Vifa3g04856 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Vifa3g04856 355 Gene3D - 271 327 IPR036638 GO:0046983
Vifa3g04856 355 Pfam Helix-loop-helix DNA-binding domain 279 319 IPR011598 GO:0046983
Vifa3g04856 355 CDD bHLH_AtIND_like 270 332 - -
Vifa3g04856 355 MobiDBLite consensus disorder prediction 195 280 - -
Vifa3g04856 355 MobiDBLite consensus disorder prediction 206 228 - -
Vifa3g04856 355 FunFam Basic helix-loop-helix transcription factor 270 327 - -
Vifa3g04856 355 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 87 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04856 Vifa-Chr3 1405774170 1405775653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04856 205 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 63.380 1.96e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g04856 HLH 7.6e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04856 3 1405774170 1405775653 Vifa3g04856 3 1405774170 1405775653 ECH