Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04854 ATGGAGAACCTTCTTTCCGCAAATCATAAACAACCGAAGAGAGAACTCGACGCACCAGAGTCACCACTCTCTTCCACCACCATGGCCTCCGTGGAGCAGCAGCCTCTGAAGAAGCGAAAGCTTCACGACTCTCCACCATCGGAATCACCGCAATCTCCACCGCCACAACCGCCAGGAACCACCGCGCCCATTCTTCAAACCCTACCTCCTCCACCTTTGTCTCAGGAGGAAATTATCGCCAAGCGCAGAAACAAGGACGCAATTCGAAACCTCTTTGAAGGTTACAAGCGAATTAAACGATGTCTCCTCCAGAAACAAGTTCCCTCCACACCTGAACTTGATCAGAACTTTTTCGCTCTCATCGCTTCTTCCAGAGGTTGTACGAGTGTACAAAGAATTGTGGCCGATTTAATTCCTCGATATGCTTGTCACTGTCCAACGGCTTTGGAAGCGGCGGCCAAAGTGGTTATCAATATGCATAACTGGAGTTTGGCATTGATCAGTAAGGAAGAGGATTCCAGTGGTATTGCATTTGAAACTGCTAAAGCCTGTATTTTCGGATTGGCTGATATTTGCCACGCTGCTTCTTCAGTAGCACCAACTTCAGCTGTAGTTAGAGGAATTCGCTCAACAACTTTTCAAAATGTGCTCACCTTTTTTGTTGCCTTATTTGAGGAAAAGGATTTCTTAAGGATGGTTGACAAGAATTTCCTCAAAATGCAAGATGATCCTGAGGCCTTTTCTGAATTGGAACGAAATATTTTAAATCAAGATGATTCTTCGTTGACTAAATTGTCCAAGTTCCGTACATTATGTATACTTTGGATATTTTTCTCTTGTCCAAAAGAATTGCTTGCGGCTTGTTTGGAACTCTTTGAAGCCACCACAAAAGAGGGAACTTCTAACGAAGGAAAGCGTTTTCTGAGCATGGTAACTAGCATGCTTAATGGTGGACCTAAAACTTGTAGCGATTATATTGGGGAAGGCGTCAAAGAGATTGAGGTTGGCGAGAAAGTTATCACCGATGACAACCATATATACGATGCTCAAAAGAGCTGCTTGCTTATGCTGGTTCTTAACAAGGACCGCTCACTGCGGAATTGGACTGTGCGTCGATGTAAAAAGTTACTTGACTTGCTCACTAATGCTTCCTTGGAAACTACATCAGTATTGCAAGGAATTCTTGGAATGTTCACTCAGCAGACCGAGTTAGGAGACTGTCAAATAGATAGTGATGAAGATAAATCTGATTCTTCAATTTTCATGAATAGAAAGTATGGGATTCCTAAGATCTTTGAGGAACATGAAAGTATTGGCGAAACATCACAAAAAGGTTCTCATTTTGATAATGGAGGGATATCAACGTCTGTGGGTGTTGAGAAAGGTGACATGCCCCATGTTAGGTGTCCCACGCCTAGGGACTATGTAAGCCATCAGATATTCTCACCTACAGTTAGAACAGCGGTAGATTTCAGGAGTAATTCATTCGATGGTAGAAATGATTTCCCAATTGTTGAGAAAAATCAAGTTTTAAATGCAAATTTCAATTCACCTCGGTCAAGGTCCTCTAGTGGTGCTGTCAGCAATGTTCTGGCTTCTCCAAATCATCATTTTATGTCACCAACTTCATTAGCCAGAAGTCAAATTGTTTGGTGCTGTGACGGGGATCCTGCTGCTGTAGATGTTGTCGCTGCTTCTAAGCAGCTATGGGTAGGTTGTGTAGCACCTGACATGCCTGAAAGCCATATTAGATTTCAATTAGAGAGGTTTGGTCCTATTGAAAAGTTTATATTCTTCCCTTTGAAAGGATTTGCTTTAGTTGAGTACAGAAGGATAATTGATGCAATAAAGGCTCGACACTTTGCACCTCAAAATTTTCCTTGCCGTGTAAAATTCATGGATATAGGACTTGGTACTAAGGGTGCAATGAATAGTGTGGCAGTTGGCTCTAGTTCTCATATTTATGTTGGAAATATTTCCAGTCAATGGGCTAAGGATGAGATTCTTCATGAATCAAGGAAAGTAGTTTATAAGGGTCCTCTCACATTTATTGATCTTAGCTGTGAGTGTGCATTACTTATGGAGTTTGAAACCCCTGAAGAAGCTGCCTCTGTTATGTTGCATCTGAGACAGCTCCGAAGAGAAAGAAGTAGTTATCACCCACATTTGGGTCCTGGAACAGTTAATGTTGTAAGTGGGCATGCTTATATGGATGGTGCAAGACCTTTGCCCACCCCTGCCCATCTGGACTTCAAGGTCAGCAACTCTGCTGGATCACCTCACGCTCGAACTGTACATGGGAGCCCTGCTGAAAGTAGTCAAGCAAGAATGTCTCACTTGTGTAACATATTAGCTTCATTGCGTGCAAAGTATAATATTAATCAAAACACAGGTCTCAATGATAATTATATGACTGGAAATAATTTTGCTGCTTCCACGCGTGAGGAAGATGCAGTGCCATCCAGCACTCTGTGGATAACTATTCCACATAATAGCTCCCAGTTCCTCACAGATGATGAGCTAATGAGTATTTGCAACCTTGCTATTGGAAACTCTGGTTTCATTGCACGGTTGACACAAGCGAAAATTCACATGGGATGTCGTTGGTTTGTTGAATGTAGTAATGTTGATAGTGCAGTTTCCGTCGTAAAGAATCTGCGTGGTTGTCCAGGATTGTTCTTCCAAATAGAATTCAGCAAACCGGGAAATCAGAATGCTGTACCATTTTCAATTAAACCTGAAAACCATGCTATGGAGCTTGTTTCCCCCAGAATAAATGCTGAGAATCATAGTAGTGGTGTACCTGGTGCACCTCTCTCTCAGTCAAACTGGCACTACCCTGATTCTAGGGAGATATCAGAAGTTGGAGTAAGGAAACCTGATGGTTATGATCATTTATCAGTGGATCCTCATCGAGGAAATGCTCCACATTTACACTCTGGAACACGTGGACCTTCCATTCCACCACCACCACAACAAATTCAGTCATCTCCTTTCACCCGCCCTGTTTATGCTCCTCCAAATGGGCCATGGGATCCTCATGGAATAAATAATCAGTTACCTGTCAACCAATTTCAGACAGGTGTAATGCCAAATAATTTTAATGGCAGTCCTTTCATATCTGCTTCAGTAACTCCACTTGCTCAGATACAAGGAACTCCAATGCAATCCTATAACCAGCAGATTCCTCCGTTAATTGTACCACCGTCTCTATCATCTTTGCCACCTCATCAACCTGAAATGCCACCTCCTCACCCACATCCTCCTTCTCCTTCTCTTCCACCTCTACCCCAGACACAACCACCCCCGGTTCCTCCACCACCCGGTTCTCCTCCTCCACCTCCTCCACCCTTGCCTGTCCAAGAACCAGTCGATATGGAATGTTCGGAACAGCCACTGCAGTATCAGTGGCAGGGAAATCTCTGTAAAAGTGGAGTCAGCTACTGTACAATTAATGCATGCAGAGCAGATTCAAATATGTGCAGATATTCTAATGCCATACCCGAGCCTGCCGAATGGCCTACCAAATTAGACATGACTAAACGCACAGATTTGAGGCATGTGCAATCAACATTTGCTGCTACGCCATCTCATAGAAGGGAAGTATGCCGTTTAATCCCATCTTCAACAAGTAACGACAGAAGGTTTCAGGATTTCGTATCATACTTAAAACAGAGGGATTGTGCTGGAGTTATTAAAATCCCAGCTTCAAAATCCATATGGGCAAGGCTGCTATTTATACTTCCTCATTCACTTGAAACATGCTCGTTGCTGTCCATTGCACCCGATCCATCTGAGTGCCTAATTGCTTTGGTTTTACCCAAAGAAACAAACTTTGAATGGGAATGA 3849 0.431 MENLLSANHKQPKRELDAPESPLSSTTMASVEQQPLKKRKLHDSPPSESPQSPPPQPPGTTAPILQTLPPPPLSQEEIIAKRRNKDAIRNLFEGYKRIKRCLLQKQVPSTPELDQNFFALIASSRGCTSVQRIVADLIPRYACHCPTALEAAAKVVINMHNWSLALISKEEDSSGIAFETAKACIFGLADICHAASSVAPTSAVVRGIRSTTFQNVLTFFVALFEEKDFLRMVDKNFLKMQDDPEAFSELERNILNQDDSSLTKLSKFRTLCILWIFFSCPKELLAACLELFEATTKEGTSNEGKRFLSMVTSMLNGGPKTCSDYIGEGVKEIEVGEKVITDDNHIYDAQKSCLLMLVLNKDRSLRNWTVRRCKKLLDLLTNASLETTSVLQGILGMFTQQTELGDCQIDSDEDKSDSSIFMNRKYGIPKIFEEHESIGETSQKGSHFDNGGISTSVGVEKGDMPHVRCPTPRDYVSHQIFSPTVRTAVDFRSNSFDGRNDFPIVEKNQVLNANFNSPRSRSSSGAVSNVLASPNHHFMSPTSLARSQIVWCCDGDPAAVDVVAASKQLWVGCVAPDMPESHIRFQLERFGPIEKFIFFPLKGFALVEYRRIIDAIKARHFAPQNFPCRVKFMDIGLGTKGAMNSVAVGSSSHIYVGNISSQWAKDEILHESRKVVYKGPLTFIDLSCECALLMEFETPEEAASVMLHLRQLRRERSSYHPHLGPGTVNVVSGHAYMDGARPLPTPAHLDFKVSNSAGSPHARTVHGSPAESSQARMSHLCNILASLRAKYNINQNTGLNDNYMTGNNFAASTREEDAVPSSTLWITIPHNSSQFLTDDELMSICNLAIGNSGFIARLTQAKIHMGCRWFVECSNVDSAVSVVKNLRGCPGLFFQIEFSKPGNQNAVPFSIKPENHAMELVSPRINAENHSSGVPGAPLSQSNWHYPDSREISEVGVRKPDGYDHLSVDPHRGNAPHLHSGTRGPSIPPPPQQIQSSPFTRPVYAPPNGPWDPHGINNQLPVNQFQTGVMPNNFNGSPFISASVTPLAQIQGTPMQSYNQQIPPLIVPPSLSSLPPHQPEMPPPHPHPPSPSLPPLPQTQPPPVPPPPGSPPPPPPPLPVQEPVDMECSEQPLQYQWQGNLCKSGVSYCTINACRADSNMCRYSNAIPEPAEWPTKLDMTKRTDLRHVQSTFAATPSHRREVCRLIPSSTSNDRRFQDFVSYLKQRDCAGVIKIPASKSIWARLLFILPHSLETCSLLSIAPDPSECLIALVLPKETNFEWE 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04854 1282 MobiDBLite consensus disorder prediction 1068 1122 - -
Vifa3g04854 1282 CDD RRM_SF 569 631 - -
Vifa3g04854 1282 Gene3D - 557 642 IPR012677 -
Vifa3g04854 1282 MobiDBLite consensus disorder prediction 967 994 - -
Vifa3g04854 1282 SMART rrm1_1 568 631 IPR000504 GO:0003723
Vifa3g04854 1282 CDD SPOC_FPA-like 1136 1274 - -
Vifa3g04854 1282 MobiDBLite consensus disorder prediction 47 70 - -
Vifa3g04854 1282 SUPERFAMILY RNA-binding domain, RBD 567 707 IPR035979 GO:0003676
Vifa3g04854 1282 MobiDBLite consensus disorder prediction 1059 1124 - -
Vifa3g04854 1282 Pfam SPOC domain 1130 1273 IPR012921 -
Vifa3g04854 1282 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 25 1233 - -
Vifa3g04854 1282 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04854 Vifa-Chr3 1404259012 1404269097 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04854 3 1404259012 1404269097 Vifa3g04854 3 1404259012 1404269097 ECH