Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04836 ATGTTGTGTGCTTGTTCTGGAGAGCAGCACAAATTTGAAGAGGTGCCACAATCACCTGATTCATTAGCAACGAGGGATTTCTCTGCTAGTGGATTGTCTTCAAGGACTGGAGATTGGGAATCTAAGTTCAATGAAAATCAAGTTGAAGATGTTGAATCTACTTTGAAAGAAGCTCTCTCATTGAACTATGAGGAAGCTAGAGCTTTGTTGGGGAGGCTTGAATATCAAAGAGGGAACTTTGATGCTTCCCTTCAAGTGCTTCAGGGTATTGATATTGGTTCTTTGACCCCAAGGATGATCAGGGCTATAGCTGAAAGAAACAAGCAAAGAAAACCTCGTTCCAAGGCGGGTACCGTGCTTCCTAATCTGATGTCAATGCATTCAGTAAGCCTGCTTCTTGAAGCAATTTTGCTTAAAGCCAAATCCTTAGAGAAACTTGAGCGACACGAAGAGGCTGGGAAGGAATGCCGAATAATTGTGGATACAATTGAATCAGCACTTCCTTATGGAATGCCCGAAGGTATCGGTGAAGTTTGTAAGTTGCAGGAAATGTTCCACAAAGCATTGGAGTTGCTTCCAAATCTTTGGATCAAAGCAGGTTTTCTAGACGAAGCTGTCACTGCTTATCGGCGTGCACTGGTCAAGCCATGGAATTTGGACCCGAGGAGGTTGGCCTGTCTACAAAAGGATTTAGCTACCACATTACTCTACGGTGGTGTTGAAGTAAACCTACCATCTCACTTACAAGTGAATGGTCCAACAACACCAATGAGTAACATCGAAGAAGCGATACTTTTGTTATTGATACTATCACGAATGATGGCACTTCAGACAATAGATTGGGATGCTGAAATAATTGATCATCTTACATTTTCGCTTTCAATTACTGGGATGTTTGAATCATTGGCAGATTGTGTAGAGCAGATCCTACCAGGTATCTTCAGTCGAGCCGAGAGGTGGTATTTTCTTGCTCTTTGTTATAGTGCAGCAGGAAACAACGAAGCAGCCTTGAACCTTTTGCGGAAGGTTTGTGGTAATTCTGAATCAAAGCATATACCTCATTTTGCTTCATATTTGTTTGGTGCAAAACTGTGTTCCCAATATCCAAATCATGCTCATGAAGGCGTCAAACTTTCACAACAAGTTATTGATCTAGCCAAGCATCAAAATGAGCATTTTATAGTTCAAGGCCAACAAATTCTCGGTGTTTGTTATGGGGCAGCAGCTAGAAAATCTGTAGTGGATTCTGAAAGAGTTACTTTTCAAAAAGAGTCTTTGAGCTTTCTAAATGCAGCTGCTCTAACTGGAGACGGGAATGCAGAAGTGATTTTCAGCCTTGGACTCGAAAATGCGATTCAGAGGAATCTAGATGCGGCTTATCACAATATAATGAAGTACTCAGACATGACGGTTGGTAGCTCTGCAAGAGGTTGGCAGTTGTTAGCTCTCATAGTATCTGCACAGAAGAGGCTTAAGGATGCCGAAACTATAGTTGATTTTGCTTTAGACGATGCCGGGAGTGTGGATCAGTTAGAGCTACTAAGACTTAAAGCTGTACTTCAAATTTCTCAGAAACAACCAAAGCAAGCTATAGAGACCTACAAAGTCTTGTTAGCAGTAATAGAAGCCAGGAAGGAGCTTTCACTTCAAGCTAAGAATTTCGGGTTTGATCAAGCGAAAGTATTCAGGGATGAGGCATTAACGGAACGGAAGTTGGAAAGGGAAGCATGGCAGGATTTAGCAACCATTTATACCGATGTTAATTCCTTTCTTGATGCAAAAGCTTGTGTTGACAAAGCTAAATTGCTCGAGTTTTTCTCTCCCAGAAGTTGGCATACTACAGGGAAGTTGTTTGAAGCACAATCATTATACAAGGAAGCCTTTGTTTCATTCTCAATCTCATTGTCAATAGAACCTGATTATGTTCTGAGTATCATTTCAACTGCCGAGTTGTTGATTAAACTTGGTATTCAATCATTTCCAATGGCAAAAAGCTTTTTAATGAATGCTTTGCGATTGGAACCTACAAACCACGACGCCTGGTTCCATCTCGGAATGGTTTCGAAAATGGAAGGTTCATTACAACAAGCAGCAGATTGCTTTCAAGCTGCTTATGAGCTGAAGTTTACTACTCCAGTGCAAAAATTTGAGTGA 2154 0.4113 MLCACSGEQHKFEEVPQSPDSLATRDFSASGLSSRTGDWESKFNENQVEDVESTLKEALSLNYEEARALLGRLEYQRGNFDASLQVLQGIDIGSLTPRMIRAIAERNKQRKPRSKAGTVLPNLMSMHSVSLLLEAILLKAKSLEKLERHEEAGKECRIIVDTIESALPYGMPEGIGEVCKLQEMFHKALELLPNLWIKAGFLDEAVTAYRRALVKPWNLDPRRLACLQKDLATTLLYGGVEVNLPSHLQVNGPTTPMSNIEEAILLLLILSRMMALQTIDWDAEIIDHLTFSLSITGMFESLADCVEQILPGIFSRAERWYFLALCYSAAGNNEAALNLLRKVCGNSESKHIPHFASYLFGAKLCSQYPNHAHEGVKLSQQVIDLAKHQNEHFIVQGQQILGVCYGAAARKSVVDSERVTFQKESLSFLNAAALTGDGNAEVIFSLGLENAIQRNLDAAYHNIMKYSDMTVGSSARGWQLLALIVSAQKRLKDAETIVDFALDDAGSVDQLELLRLKAVLQISQKQPKQAIETYKVLLAVIEARKELSLQAKNFGFDQAKVFRDEALTERKLEREAWQDLATIYTDVNSFLDAKACVDKAKLLEFFSPRSWHTTGKLFEAQSLYKEAFVSFSISLSIEPDYVLSIISTAELLIKLGIQSFPMAKSFLMNALRLEPTNHDAWFHLGMVSKMEGSLQQAADCFQAAYELKFTTPVQKFE 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04836 717 SMART tpr_5 511 544 IPR019734 GO:0005515
Vifa3g04836 717 SMART tpr_5 678 711 IPR019734 GO:0005515
Vifa3g04836 717 SMART tpr_5 317 350 IPR019734 GO:0005515
Vifa3g04836 717 SMART tpr_5 608 641 IPR019734 GO:0005515
Vifa3g04836 717 Gene3D Tetratricopeptide repeat domain 422 713 IPR011990 GO:0005515
Vifa3g04836 717 Gene3D Tetratricopeptide repeat domain 39 343 IPR011990 GO:0005515
Vifa3g04836 717 ProSiteProfiles TPR repeat profile. 608 641 IPR019734 GO:0005515
Vifa3g04836 717 PANTHER PROTEIN NPG1 1 717 IPR043376 -
Vifa3g04836 717 Pfam Tetratricopeptide repeat 317 344 IPR019734 GO:0005515
Vifa3g04836 717 ProSiteProfiles TPR repeat profile. 678 711 IPR019734 GO:0005515
Vifa3g04836 717 SUPERFAMILY TPR-like 424 601 IPR011990 GO:0005515
Vifa3g04836 717 MobiDBLite consensus disorder prediction 21 38 - -
Vifa3g04836 717 SUPERFAMILY TPR-like 133 463 IPR011990 GO:0005515
Vifa3g04836 717 Coils Coil 56 76 - -
Vifa3g04836 717 MobiDBLite consensus disorder prediction 15 38 - -
Vifa3g04836 717 SUPERFAMILY TPR-like 564 709 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04836 Vifa-Chr3 1398425427 1398429102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04836 1 716 Calmodulin-binding Proteins AT1G27460 56.667 0.0 818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04836 3 1398425427 1398429102 Vifa3g04836 3 1398425427 1398429102 ECH