Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04830 ATGGCATTTGCAGGAACTACTCAGAAATCTTGTTTCAGATGTCATCACTGCAAAGGAACCCTCAAGTTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTACTGCAAGCCACACTTTGATCAACTCTTCAAGAGAACTGGAAGTCTTGAGAAAAGCTTTGAAGGGACACCAAAAATTGCAAAACCAGAAAGAAGTAGTGATAATGAGAAACCTGCGGCGGTTAAAGCCTCTAGTATGTTTGGTGGAACAAGAGATAAATGTTCTGGTTGTCAGAAAACAGTTTATCCAACTGAGAAGGTTACTGTGAATGGAACTCCTTACCATAAGAGTTGTTTCAAATGCTCCCATGGAGGATGTGTTATTAGTCCTTCCAATTACATAGCACATGAGGGAAAACTTTACTGCAAACATCACCATGTTCAACTGATTAAGGAAAAGGGAAATTTAAGCCAGCTTGAAGGTGATCATGAGAAACATGCAAAAATCAACGGCGAACAAGTTGCGGCTGAAACATGA 516 0.4012 MAFAGTTQKSCFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLEKSFEGTPKIAKPERSSDNEKPAAVKASSMFGGTRDKCSGCQKTVYPTEKVTVNGTPYHKSCFKCSHGGCVISPSNYIAHEGKLYCKHHHVQLIKEKGNLSQLEGDHEKHAKINGEQVAAET 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04830 171 CDD LIM2_SF3 87 147 - -
Vifa3g04830 171 SMART lim_4 86 138 IPR001781 -
Vifa3g04830 171 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 113 152 - -
Vifa3g04830 171 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 79 112 - -
Vifa3g04830 171 ProSiteProfiles LIM domain profile. 85 145 IPR001781 -
Vifa3g04830 171 FunFam LIM domain and actin-binding 1 81 151 - -
Vifa3g04830 171 Pfam LIM domain 87 141 IPR001781 -
Vifa3g04830 171 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 13 53 - -
Vifa3g04830 171 MobiDBLite consensus disorder prediction 54 80 - -
Vifa3g04830 171 PANTHER OS06G0237300 PROTEIN 81 159 - -
Vifa3g04830 171 Gene3D Cysteine Rich Protein 82 151 - -
Vifa3g04830 171 Gene3D Cysteine Rich Protein 5 51 - -
Vifa3g04830 171 MobiDBLite consensus disorder prediction 56 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04830 Vifa-Chr3 1397159452 1397160634 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa3g04830 LIM 2.9e-13 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04830 3 1397159452 1397160634 Vifa3g04830 3 1397159452 1397160634 ECH