Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04492 ATGAATAAAGAAAATGTTGAGAATGTTAGGGTGACTCGAGCAAGGGCTAGAGCCATGAAAGCGACTTCGACAACTGTGATTGGATTAAGGGATGTGACTAACATTTCAACAAAATCATCGCACAATAATAAGCGTATTCATACGTCAAATTTGCAGAAGAATGAAGGTTGTAAGAAGAGAAAGACCAAGGCAGCTTCAGAAGAAAATGCCTCCTTACAAGTTTTGACAACCAAAGAGAATGTTCAGAAAGAGTTGGCTAAAGATTCTTCGACAACAACAATGAAAGATTCTCTGCAGCAGCAAGTGCAACCTTATTTGATTGTTACCAGGTTTTCATTGCAGAACTCTGTCAACTCTCCAATTGAAGATATAAATCTGATATGCGAGAAGCTAAGAACCTCGGTTGGCTTTGGAATCGTGGACATTGATTTGGAGGCAAAGGATTCTCCTGTTTGGACTTCTTATGCCCCTGATATATACTATAATGTTCATGTCAGAGAGTGTGAAAAGAGGCCACTAGCCAATTACATGGAAAAGGTGCAGCAAGACATCACTCCAACCATGCGGGGAATTCTGGTTGATTGGCTTGTGGAGGTTTCTGATGAATATAAACTAGTTCCAGACACACTCTACCTGACAGTGAATCTCATTGATCGATTCCTTTCCTGTCGCGTGATTACAAGGCAGAGGCTCCAGTTGCTTGGTGTTACTTGCATGCTGATTTCGTCTAAGTATGAAGAGATTTCTGCTCCTGGACTAGAAGATTTTGTCACCATCACCGATAATACATATTCGAAAAAAGAGATGTTGAAAATGGAGAAAGAGGTGCTGAATGTTCTGCACTTCCAGTTATCTGTTCCTACAATCAAAACATTTCTCAGGAGGTTCGTCCAAGCAGCACAATCTTCTTACAAGGTTGCTTATCCTGAACTGGAATTCATGGCTAATTATTTAGCAGAGCTTGCACTGGTTGAATACAGCTTCTTGCTGTTTCAACCTTCCAAGATAGCTGCATCTGCAGTTTTTCTTGCCAGATGGACTCTAGGCCAGTCAGAACATCCATGGAATCCGACTCTTGAGCACTATACAAATTACAAAGCATCAGAGCTTAAAACTACTGTCCTTGCACTGCTTGATTTGCAGCGTAATACCAAAAGCTGTGGTCTGAATGGTGTTCGCGACAAATATAAACAAGATAAGTTCAAAAGTGTGGCAAATTTTTCTCCGAAACCGGTGGAACCTCTTTTCTAG 1251 0.4093 MNKENVENVRVTRARARAMKATSTTVIGLRDVTNISTKSSHNNKRIHTSNLQKNEGCKKRKTKAASEENASLQVLTTKENVQKELAKDSSTTTMKDSLQQQVQPYLIVTRFSLQNSVNSPIEDINLICEKLRTSVGFGIVDIDLEAKDSPVWTSYAPDIYYNVHVRECEKRPLANYMEKVQQDITPTMRGILVDWLVEVSDEYKLVPDTLYLTVNLIDRFLSCRVITRQRLQLLGVTCMLISSKYEEISAPGLEDFVTITDNTYSKKEMLKMEKEVLNVLHFQLSVPTIKTFLRRFVQAAQSSYKVAYPELEFMANYLAELALVEYSFLLFQPSKIAASAVFLARWTLGQSEHPWNPTLEHYTNYKASELKTTVLALLDLQRNTKSCGLNGVRDKYKQDKFKSVANFSPKPVEPLF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04492 416 Gene3D - 172 285 - -
Vifa3g04492 416 FunFam Mitotic cyclin 6 172 272 - -
Vifa3g04492 416 PANTHER CYCLINS 87 371 IPR039361 -
Vifa3g04492 416 FunFam Cyclin A1 274 406 - -
Vifa3g04492 416 SMART cyclin_7 194 278 IPR013763 -
Vifa3g04492 416 SMART cyclin_7 291 379 IPR013763 -
Vifa3g04492 416 Pfam Cyclin, N-terminal domain 158 285 IPR006671 -
Vifa3g04492 416 Gene3D - 158 406 - -
Vifa3g04492 416 Pfam Cyclin, C-terminal domain 287 409 IPR004367 -
Vifa3g04492 416 SUPERFAMILY Cyclin-like 151 284 IPR036915 -
Vifa3g04492 416 PIRSF Cyclin_A_B_D_E 1 414 IPR046965 GO:0016538|GO:0044772
Vifa3g04492 416 SMART Cyclin_C_2 287 410 IPR004367 -
Vifa3g04492 416 SUPERFAMILY Cyclin-like 286 409 IPR036915 -
Vifa3g04492 416 CDD CYCLIN_AtCycA-like_rpt2 287 401 - -
Vifa3g04492 416 ProSitePatterns Cyclins signature. 189 220 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04492 Vifa-Chr3 1286487150 1286490804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04492 29 408 Core Cell Cycle Gene Families AT1G80370 51.832 4.56e-126 370
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04492 3 1286487150 1286490804 Vifa2g04075 2 1193163236 1193166983 PCT