Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03954 ATGTTAGCGTCCATAATCCCAATCCTAACACCCTCTTCCAACCTCAACCCTTCCCATTTCGTCCCCTCAATCACAACAACCAGAGTCTCATTCCCACAATCTTCTCCCTCTTCCAAACCACACTCAAAACCCCCTCTATTTCCCAGGTTCAGTCGTAGCTCCAACAGTAATAATGCTCCCGACCCCGCCGTCGGTCCCGCTTCTCCGGAAATTGATGAAGTAGAAAGTGAATCATCATCTGAGTTTGGTGATAGCTATGTGGCCTTGTTTGTTCGTATGCTAGGCCTAGATAATGATTCTCTTGATAGAGAACAGGCTATAATTACTCTTTGGCAATACTCACTTGGTGGAAAGAAGTGTATTGACAATATCATGCAATTTCCTGGCTGTGTTAATCTTGTTGTGAATCTGCTTAGATCCGAGTCAAGTTCGTCGTGCAAGGCTGCTGCAGGCCTTCTGCGAATGATATCTTCCATTGATCTATATAGGAATTCTGTAGCAGATAGTGGAGCTATAGAAGAGATAAATAGATTGCTAGTACAATCTTCCTTGGGTCCTGAGGTAAAGGTGCAGAGTTTGAATATGCTGTGGAACTTATCTGTTGACGAGAAGCTCCGCGTTAAACTTGCAAAGAGTGATATTCTTTTGTTAGCTATTAAGTTCCTTGATGACGAGGATATAAATGTGAAGCAAGCTGCAGGGGGTGTTTTGGCAAATCTAGCGTTGAGCCGTGTTAACCATGATATCATGGTTGAAGCGGGTATTATTCCAAAATTGGCGAAATCCTTAACATCTGACTCTGAAGGATCTCGAGTCATTATTACAAAGGAAGCAAGGAATGCATTGCTGGAACTCGTGAAGGACGACTACTACAGAATTCTAGTTATTGAGGAAGGTTTAGTTCCTGTGCCATTAATAGGTGCCGCGGCCTATAAGTCATACACCCCACGTTTATATGAACCCCCTGCATTTCCAGATGATGAAGCAAAAGTCAATGCAGTGATTGGACAGACACGACAGCAATTCCTTGTTCGTATTGGTGGCATAGAAATGGGAGAAACGACATCTCATTCTGAATATTCAGATGATCAGACGCGTCTTACACTCTTACATTGGATTGATGGTGTTGCTCGTTTAGTACTGATACTAGAACTAGACGATAAGTCAGCAATACTAAGAGCTGCAAAGTCAATTGCTAGTGCTTGTATTAATGAACATATGCGTATTGCATTCAAGGAGGCTGGTGCAGTAAAGCAATTACTACGGCTTTTGAGTTGCAATGATGATGCAGTCCAGCTGGCAGCGACTCAAGCTTTGGAAAGGCTGTCTGCTAGCAACATTGTTTGCCGCGTAATTGAAGCCATGGGCGGTTTGGGTCCTTTAGTAAGTATTTTAAAATGCTCAGACATAGGTGGAGCTATTGTGGAAAAGTCTCTGAACATACTTGCTCAGATATTAGATCCCAATAAAGAGATGCAAGTGAAGTTTTATGATGGACCAGTTAATAGATCTGTGAAGGAATTTGGTGGAGCCAAAAATGATGGTAGATTAAGTAGCACCGACTCTGAGCAAGTTGTATCGAAAACAAACCCAAGGATCGATATACTGGACTCGATTTTCACTGCACGCCTTGTTGAGATTTTAAAGTCCTCTTCACCCAGTTTACAAGAAAAGGCTGCATCTGTTCTAGAGTTTGTGGCATTGACTGACCCAACACTGACTTCGATTATATACGTGGATATTGAAAATGGCCTCAGTTCTACTTTTCAGCAAAATTTCTTGAAAATTTCGGCAGACACGGAATGTGATGCGGAAGATCAGTTTTCAGCGGCATATGCTATTAAACTAGAAGAAGCTGGCCTTGCAATATCTGCAGCTTCCCGGTTACTGACAAGACTGCTCGACTCTCAGCAGTTTCGCAACAAAATAAATTTCTCCAGTTTCATTGACACGCTCCGCAAAATTCTCAAGTCCAATATTCCTCTTCGCAGCAAAGATTGGGTAGCTGCTTGCCTAGTTAAACTAAGTTCTCTCTCTGGTCACGACACGAGTTCTAATCCAATCAATGTTGAAGTTACACTTTATGAGACTATTCCAAGACTTGTAGAACAGATCAAAACATCATCCTCTTTAGAAGCTCAGGAAAATGCTGTTGTCGAACTAAATAGAATAGTATCTGAAGGGGTGGTAGATTCCACAGGAGCTATTATTTCTCTAGGGGCGGTGAATCCGCTGGTGAAGCTGATTGAAGAAGGAAGTGAAATAGGTGTTGAAGCAAGCTTGACAATACTGTATAATCTGAGTATGGACAGTGAGAACCATGCAGCACTTGTAGCTGCTGGAGCCGTCCCTTCCTTAAGAAGAATTGTTCTTTCAGAAAAACCGCAGTGGCAAAGGGCACTTCATTTGCTCAGGAATTTGCAGATATGA 2430 0.4239 MLASIIPILTPSSNLNPSHFVPSITTTRVSFPQSSPSSKPHSKPPLFPRFSRSSNSNNAPDPAVGPASPEIDEVESESSSEFGDSYVALFVRMLGLDNDSLDREQAIITLWQYSLGGKKCIDNIMQFPGCVNLVVNLLRSESSSSCKAAAGLLRMISSIDLYRNSVADSGAIEEINRLLVQSSLGPEVKVQSLNMLWNLSVDEKLRVKLAKSDILLLAIKFLDDEDINVKQAAGGVLANLALSRVNHDIMVEAGIIPKLAKSLTSDSEGSRVIITKEARNALLELVKDDYYRILVIEEGLVPVPLIGAAAYKSYTPRLYEPPAFPDDEAKVNAVIGQTRQQFLVRIGGIEMGETTSHSEYSDDQTRLTLLHWIDGVARLVLILELDDKSAILRAAKSIASACINEHMRIAFKEAGAVKQLLRLLSCNDDAVQLAATQALERLSASNIVCRVIEAMGGLGPLVSILKCSDIGGAIVEKSLNILAQILDPNKEMQVKFYDGPVNRSVKEFGGAKNDGRLSSTDSEQVVSKTNPRIDILDSIFTARLVEILKSSSPSLQEKAASVLEFVALTDPTLTSIIYVDIENGLSSTFQQNFLKISADTECDAEDQFSAAYAIKLEEAGLAISAASRLLTRLLDSQQFRNKINFSSFIDTLRKILKSNIPLRSKDWVAACLVKLSSLSGHDTSSNPINVEVTLYETIPRLVEQIKTSSSLEAQENAVVELNRIVSEGVVDSTGAIISLGAVNPLVKLIEEGSEIGVEASLTILYNLSMDSENHAALVAAGAVPSLRRIVLSEKPQWQRALHLLRNLQI 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03954 809 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 457 IPR000225 GO:0005515
Vifa3g03954 809 MobiDBLite consensus disorder prediction 29 79 - -
Vifa3g03954 809 SUPERFAMILY ARM repeat 367 798 IPR016024 -
Vifa3g03954 809 SMART arm_5 729 769 IPR000225 GO:0005515
Vifa3g03954 809 SMART arm_5 404 444 IPR000225 GO:0005515
Vifa3g03954 809 SMART arm_5 770 809 IPR000225 GO:0005515
Vifa3g03954 809 SMART arm_5 243 287 IPR000225 GO:0005515
Vifa3g03954 809 SMART arm_5 684 726 IPR000225 GO:0005515
Vifa3g03954 809 SMART arm_5 159 201 IPR000225 GO:0005515
Vifa3g03954 809 SMART arm_5 117 158 IPR000225 GO:0005515
Vifa3g03954 809 SMART arm_5 528 568 IPR000225 GO:0005515
Vifa3g03954 809 SMART arm_5 202 242 IPR000225 GO:0005515
Vifa3g03954 809 Gene3D - 595 808 IPR011989 -
Vifa3g03954 809 SUPERFAMILY ARM repeat 90 306 IPR016024 -
Vifa3g03954 809 Gene3D - 352 594 IPR011989 -
Vifa3g03954 809 Gene3D - 80 314 IPR011989 -
Vifa3g03954 809 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 327 808 - -
Vifa3g03954 809 Pfam Armadillo/beta-catenin-like repeat 404 444 IPR000225 GO:0005515
Vifa3g03954 809 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 170 203 IPR000225 GO:0005515
Vifa3g03954 809 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 740 782 IPR000225 GO:0005515
Vifa3g03954 809 MobiDBLite consensus disorder prediction 48 62 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03954 698 790 U-box Gene Family AT3G46510 37.234 7.61e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03954 3 1167462864 1167472741 Vifa3g03954 3 1167462864 1167472741 ECH