Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03624 ATGGCTCATTCTTTGTTCAACTTCATCCTCTTCATCTTCCTATTGTCATTAGCACATTCTAGAAACACACCACACAATGCCAAAACAACATTACTTGATGTTGTTTCTTCCATTCAAAAAACATATCAAGTTTTTAATTTTAACCCAAACCTTAAACAACAACAAAACGGTTCTTCTTTTTCTTCATCATCACCTTTTTCTATGCAACTTCATTCACGAGCTTCCATTCATAAACTTTCACATTCTAACTACAAATCTCTAACATTATCCAGACTCACCCGCGACTCAGCCCGAGTCAACTCCATACTAACTCAGCTAGATCCAAATTTCAACCCACAGAAGCTGTCCGGACCCATCATCTCCGGAACGAGCCAAGGAAGCGGCGAGTATTTCTCCAGAATCGGAATCGGTGAGCCACCGAGTCAAGCCTACGTAGTTCTCGACACAGGCAGCGACATAAGCTGGGTGCAATGCGCACCCTGCGCCGACTGCTACCGTCAAGCCGACCCTATTTTTGAACCATCTTCGTCGGCTTCTTACACGCCGATCACTTGTCAAGCCAATCAATGCAAATGGCTCGACCAATCTCAATGTCACAACGGTCAATGTCTCTATGAAGTATCCTACGGCGACGGCTCATACACCGTCGGCGACTTTGTCACAGAAACGGTTACAATCGGCGCGACTTCCGTGAACAATGTCGCCATCGGCTGCGGTCATAACAACGAAGGCTTATTTGTCGGTGCAGCCGGTTTACTCGGCTTAGGCGGCGGCCCACTTTCTTTTCCGGCTCAGCTTAATTCAACTTCGTTTTCATATTGTCTCGTTGATCGTGACTCTGATTTAGTCTCAACGCTAGAGTTTGATTCTCCGTTATCTCGTAACGCCGTTACAGCTCCGCTAAAGCGTAATCCTGAGATGAACACTTTCTACTTTGTGGGACTCGTCGGAATAAGCGTCGGCGGGGAGTTACTTCCGATTCCGGAAAGTAGTTTTATGGTGGATACTACGGAGGGTGGAGGGGTTATAGTTGACTCCGGCACGGCGGTGACACGGTTGCGGAGCGATGTTTATGATGTTGTACGCGACGCGTTTTTGAGGGGGACGAGGGATTTACCGGCGGCGAACGACGTGTCGTTGTTTGATACTTGTTATGATTTGTCGTTGAGGTCGAGTGTGGAGGTTCCGACGGTGGCGTTTCATTTTGGGGAAGGGAAGGTTTTGGTGTTACCGGCGAAGAATTACCTGGTACCGGTTGATTCGGTGGGGACGTTTTGTTTTGCGTTTGCTCCAACGATGGGGTCGTTGTCGATTATTGGGAATATTCAGCAGCAAGGGACACGTGTGAGTTTTGATCTTGTTAAGTCTGTGATTGGGTTTTCACCTAATAGTTGTTGA 1398 0.4728 MAHSLFNFILFIFLLSLAHSRNTPHNAKTTLLDVVSSIQKTYQVFNFNPNLKQQQNGSSFSSSSPFSMQLHSRASIHKLSHSNYKSLTLSRLTRDSARVNSILTQLDPNFNPQKLSGPIISGTSQGSGEYFSRIGIGEPPSQAYVVLDTGSDISWVQCAPCADCYRQADPIFEPSSSASYTPITCQANQCKWLDQSQCHNGQCLYEVSYGDGSYTVGDFVTETVTIGATSVNNVAIGCGHNNEGLFVGAAGLLGLGGGPLSFPAQLNSTSFSYCLVDRDSDLVSTLEFDSPLSRNAVTAPLKRNPEMNTFYFVGLVGISVGGELLPIPESSFMVDTTEGGGVIVDSGTAVTRLRSDVYDVVRDAFLRGTRDLPAANDVSLFDTCYDLSLRSSVEVPTVAFHFGEGKVLVLPAKNYLVPVDSVGTFCFAFAPTMGSLSIIGNIQQQGTRVSFDLVKSVIGFSPNSC 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03624 465 PANTHER ASPARTYL PROTEASES 28 459 IPR001461 GO:0004190|GO:0006508
Vifa3g03624 465 Gene3D Acid Proteases 288 465 IPR021109 -
Vifa3g03624 465 Gene3D Acid Proteases 104 287 IPR021109 -
Vifa3g03624 465 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 145 156 IPR001969 GO:0004190|GO:0006508
Vifa3g03624 465 Pfam Xylanase inhibitor C-terminal 311 461 IPR032799 -
Vifa3g03624 465 ProSiteProfiles Peptidase family A1 domain profile. 130 461 IPR033121 -
Vifa3g03624 465 SUPERFAMILY Acid proteases 124 465 IPR021109 -
Vifa3g03624 465 Pfam Xylanase inhibitor N-terminal 130 282 IPR032861 -
Vifa3g03624 465 FunFam Aspartyl protease AED1 105 289 - -
Vifa3g03624 465 FunFam Aspartyl protease family protein 2 290 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03624 Vifa-Chr3 1055795197 1055796594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03624 120 465 Miscellaneous Gene Families AT1G77480 27.487 8.70e-24 101
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03624 3 1055795197 1055796594 Vifa3g03624 3 1055795197 1055796594 ECH