Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03623 ATGATGGATTCTCCCGCTGTCTCATCTTCCTCCTCTGAGTTCAATTCCATAGCCACTGCTGATCAGAGTGCGGCCCGGAGTAGGAGAAATGGCGGTGGCAGTGAAGTGGTGGCTGCAGAACAATCACGGCGGTGGCGTGATGTTTTCTGGTTAGGAATATTTGTGATCCATTTGATTGGACTAGGATTCCTTCTTGGGGTTCTTGGTTTCAATAGGTTTGAGATAGAGAATAGGCTTGACATTGATAAGTACACCCCGGGTCTTTCGGGGAATGAAGCAGGGTTGACTGAGACTTATTGGCCGCTCTATGGGGCTGCGGGTGGAATTGGGACTGTTCTTGGATGGACTTGGATGTTGTTGTTGGGTTCACGGGCTACTCAAATGATGAAGGTTTCTGTTCACATCCTGACCACTTATCTCGCTGTCATTAGTGTTTTGTGTTTCTGGACTGAACAGATTTTCTGGGGGGTTGCTTTTGCTATCGGTGCTGCTCTCCAGTTCTTGTATGTTATATCCGTCATAGACAGACTTCCATTTACGATGTTGGTTTTGCAAAAAGCTGTGAAGATGGTTTGGAATCTTCCCGAGGTTATGAGAGTATCGTATGCATTTATGTTTGTTGTGCTTTTATGGATGGCCTTATGGTCATTTGGTGCAGCAGGTGTTGTGGCTTCGAACTTGAGTAATGGGGGACGCTGGTGGCTTCTTGTGATTTTCTCTGTAAGCTTATTTTGGACAGGTGCAGTACTCTGTAATACTGTGCATGTTATAGTATCTGGGATGGTGTTTCTTGTTCTTCTCCATGGTGGTAGAGAGGCTGCTTCAATTCCTGCTAACTCGTTAACGAAATCTTTACAGTATGCTTTAACAACATCTTTTGGTAGCATTTGTTATGGCTCGTTATTCACTGCTGCTATTAGGACACTGCGATGGGAGATACGTGGACTTCGGTCAAAGATTGGCAACAATGAGTGTTTACTTTGCTGTGTTGATTTCCTTTTTCATCTCGTGGAGACTCTCGTTCGATTTTTTAATAAATATGCCTATGTTCAGATAGCTGTTAACGGTAAAAGCTTTAACCATTCAGCTAGGGATGCGTGGGAGCTATTTCAGTCAACTGGGGTTGAAGCTCTTGTGGCTTATGATTGTTCAGGCGCGGTCCTGCTAATGGGCACTGTTTTTGGCGGGTTGATAACGGGAACTTGCTCTGGTGCATGGGCGTGGGTTAAATGGAGTGACAGAGTTATTATGATAGGCTCCACATCCATGCTGATGGGAATGGTTTTGGTTGGATTGGCAATGGTTGTGGTGGAGAGTGCTGTTACGTCGATATATATTTGCTATGCAGAAGACCCTTTATTGATTCAGAGATGGGATGCTGGATTTTTCAACCAGATGTCTGAGACACTACATCACCGGCTTCAGTATCGGAGTGCTCGAGCCAGGGAAGTTTTAACCCACTATCGACTCAATGACGATCCTGTACGAGAAAATGCTGCTATTTGA 1506 0.4502 MMDSPAVSSSSSEFNSIATADQSAARSRRNGGGSEVVAAEQSRRWRDVFWLGIFVIHLIGLGFLLGVLGFNRFEIENRLDIDKYTPGLSGNEAGLTETYWPLYGAAGGIGTVLGWTWMLLLGSRATQMMKVSVHILTTYLAVISVLCFWTEQIFWGVAFAIGAALQFLYVISVIDRLPFTMLVLQKAVKMVWNLPEVMRVSYAFMFVVLLWMALWSFGAAGVVASNLSNGGRWWLLVIFSVSLFWTGAVLCNTVHVIVSGMVFLVLLHGGREAASIPANSLTKSLQYALTTSFGSICYGSLFTAAIRTLRWEIRGLRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVNGKSFNHSARDAWELFQSTGVEALVAYDCSGAVLLMGTVFGGLITGTCSGAWAWVKWSDRVIMIGSTSMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIQRWDAGFFNQMSETLHHRLQYRSARAREVLTHYRLNDDPVRENAAI 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03623 501 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 37 476 IPR007603 GO:0022857|GO:0055085
Vifa3g03623 501 Pfam Plasma-membrane choline transporter 158 452 IPR007603 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03623 Vifa-Chr3 1055369134 1055371554 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03623 3 1055369134 1055371554 Vifa3g03623 3 1055369134 1055371554 ECH