Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03618 ATGTCTATGGCTGATGAACCACTGTATCCAATAGCGGTGCTTATAGACGAGTTGAAAAACGATGACATCCAACTGCGGTTGAACTCGATTCGCCGGCTGTCGACGATTGCGCGTGCGCTTGGGGAGGAGCGAACGCGGAAAGAATTAATTCCGTTTTTGACTGAAAATAACGACGATGATGACGAGGTGCTTCTTGCGATGGCGGAAGAGTTGGGAGTTTTCATTCCTTATGTTGGTGGAGTGGAACATGCTAGTGCGTTGTTGCCGCCTTTAGAGGCCTTTTGTAGTGTTGAGGAGACGTGTGTGAGGGATAAAGCTGTTGAGTCGCTTTGTCGAATTGGATCTCAGATGAGGGAGAGTGATTTGGTTGAATATTTTATACCGTTGGTGAAGAGATTGGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGTGGTCTATTCCATATTGCTTACCCTAGTGCCCCAGAAGCAACAAAGACAGAGTTGAGATCAATATACAGTCAGTTATGTCAGGATGACATGCCTATGGTTAGAAGATCTGCTGCAACAAATCTTGGGAAATTCGCTGCAACTGTTGAGTATACTCATTTGAAGGCTGACATCATGTCAATTTTTGACGATCTTACTCAAGACGATCAAGACTCTGTCAGATTGTTAGCCGTGGAAGGATGTGCTGCTCTTGGAAAATTGTTGGAGCCACAAGATTGTGTTGCACATATACTCCCAGTTATTGTTAATTTCTCTCAGGATAAGTCGTGGCGTGTGCGTTACATGGTTGCAAATCAATTGTATGAGCTCTGTGAAGCTGTAGGCCCTGAACCTACCAGAGCGGAGTTGGTTCCTGCCTATGTTCGATTGCTTCGAGATAATGAAGCTGAGGTACGCATAGCAGCTGCTGGGAAAGTGACCAAGTTTTGCCGGATTTTAAGTCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTCAAGGAATTGTCATCAGATTCTTCACAACATGTCCGCTCAGCTCTGGCTTCAGTAATAATGGGAATGGCTCCAGTGTTAGGAAAGGAAGCAACAATTGAGCAGCTTCTTCCTATTTTCCTATCCCTTCTGAAGGATGAATTTCCTGATGTGCGCCTAAACATCATCAGCAAGCTTGATCAAGTGAATCAGGTGATTGGAATCGATTTGTTGTCTCAATCATTGTTACCCGCCATTGTTGAGCTTGCAGAGGATAGACATTGGAGGTGGTTACAGGATAAGGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGTCTAGCCGAAGAGTTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGGTTTTGGAGATGACTAACAATCCACACTATTTGTATCGGATGACCATTCTCCGCGCCATCTCCCTGCTAGCCCCTGTAATGGGCTCTGAAGTCACTTGTTCAAAATTGTTACCTGCTGTTGTTGCAGCATCAAAAGACAGAGTGCCCAACATAAAGTTCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCTGTGGTAGAAAAGACAATTCGACCGTGTCTGGTTGAGCTCAGCGAGGATCCTGATGTTGACGTACGGTTTTTTTCCACCCAAGCCTTGCAGGCTATTGATCATGTCATGATGTCTAGCTAG 1671 0.4512 MSMADEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLTENNDDDDEVLLAMAEELGVFIPYVGGVEHASALLPPLEAFCSVEETCVRDKAVESLCRIGSQMRESDLVEYFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPEATKTELRSIYSQLCQDDMPMVRRSAATNLGKFAATVEYTHLKADIMSIFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRAELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPDLAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIIPQVLEMTNNPHYLYRMTILRAISLLAPVMGSEVTCSKLLPAVVAASKDRVPNIKFNVAKVLESIFPIVDQSVVEKTIRPCLVELSEDPDVDVRFFSTQALQAIDHVMMSS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03618 556 ProSiteProfiles HEAT repeat profile. 445 483 IPR021133 -
Vifa3g03618 556 Gene3D - 2 552 IPR011989 -
Vifa3g03618 556 ProSiteProfiles HEAT repeat profile. 320 358 IPR021133 -
Vifa3g03618 556 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 2 412 - -
Vifa3g03618 556 ProSiteProfiles HEAT repeat profile. 164 202 IPR021133 -
Vifa3g03618 556 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Vifa3g03618 556 ProSiteProfiles HEAT repeat profile. 484 522 IPR021133 -
Vifa3g03618 556 ProSiteProfiles HEAT repeat profile. 398 444 IPR021133 -
Vifa3g03618 556 SUPERFAMILY ARM repeat 8 549 IPR016024 -
Vifa3g03618 556 ProSiteProfiles HEAT repeat profile. 203 241 IPR021133 -
Vifa3g03618 556 ProSiteProfiles HEAT repeat profile. 523 556 IPR021133 -
Vifa3g03618 556 Pfam HEAT repeat 242 270 IPR000357 GO:0005515
Vifa3g03618 556 ProSiteProfiles HEAT repeat profile. 281 319 IPR021133 -
Vifa3g03618 556 ProSiteProfiles HEAT repeat profile. 242 280 IPR021133 -
Vifa3g03618 556 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 4 412 - -
Vifa3g03618 556 ProSiteProfiles HEAT repeat profile. 359 397 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03618 Vifa-Chr3 1053693738 1053703568 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03618 3 1053693738 1053703568 Vifa3g03618 3 1053693738 1053703568 ECH