Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03614 ATGGCCACCGATGGCCACGACTCTCGACGCAAGCATCACCGATCATCCTCTCCGGACGACCACGACAAATCCTCTAAGCGTCACAAGCACCGCCACCATCATAGCCACCGCCATCGCCATGGAAGCAAAAAACACGACGAGGAAATTCATTACGATGGCGAAATTGTTGCCGCGGTTCCTTCTCCAAGTCCCGTTTCTGATCCTGTTCCGCATAATCATCTCGCCGACGATGACGTCGAGGAGGGAGAGATTCTTGATGACGAGCCTTTGGGCGGTGAGGTTGGAATTGGAAAGAAGCAGATCGAATCTGATGTTGAATCTGGGGAAATTGAGGTGAAAGGAGGTCGAGATCTTCGGTCTGAGAAGAAAAATCCGGGACTTATTGCTAAAAGTTCAATAACTGAAAGTGAGGACTTCCACAATGATAGATTTATTAGGCCTACTTCTCGAAGTCCTGTAGATGATGATTCTCCCAACCACTCGAGAGATGAAACTCAAGCTGGGAGGGATGTTCAAGCTGGTACTGATGCTTTGGGCAATGGGTATTTGGATGCACTGGAGGCTATTAGAAAGGAAGAAAATTCCCACAAGAATGTCATTGAAAGTGGAGAAGAAAGACATAGAGTGCCAGGTAATTCTCCTTTGCACGATGGATACAGAAGTCGATCAAGATCAATTGGCCATACAAGAGACAGGTCTCGTTCTCGCAGTGCTGTAGAAGAGTATGTCCATCCCAGTAGCAGGCACTCTATGGAACAGGGTTCCCTTTATTATACTAGTAGACATAAGACTGAATATGATCTTGATGAGGAAAGAGTGAGTGCATACAGAAGGGAGCATCGTCACAGCAGTAAGGATTTGGTGGAGGATGATAAACCGGAACACAGTACCAGGTATCATAGTCGGGATGCCCGGGATAGGGCTACCTACAGGAGTAGGGACAGAGATGTGGATCTAGACTTGCACAGAGAAAAGAAGCGAGAGGAAACAAGCAGGAATAAGGAGGTTGATTGGGTGCGTAGAAGGGAGAAAGAACGTGGTAGGAGCCATGACAGACATAGAAGAGACATTGAAAAAGATAGGAGCAGGGAAAGGGATGAGGGTAGGGATAGGAGAAGAGAAAATGAAAGGCATAGGAGCAGAGACACAGTTTATGAGAGGGATAGGAGAAGGGAAATGGAAAGAGATATGAACAAGGACAGAACAATAGCTGGTGAGAGAGATAGAGACTGGAAAAGTGAATGGGATTATAGGAACCGGGAAAGGGATAACATTAAGGAGAGGGAGAGACGAGATGATAGATATCAACACAATGACAAAGATGTTCCTAATGGTAAGGATAAGCATACGCGTCGTGACGATGACAATGGAGATAGATATAAGAGACATTCAAGACATGAAGAAAATGGACACCACACAGATAGAAAAAGGAACTATACCATGGAAGAGGATGGAAGGAAACCAAAAAGTGAGATTGAACAAGATGATGTAGACGAGGATACATTGCAACTACCTGAGCAAGAAGAGGAAGATCTGAACAGAATAAAAGAGGAGAGTAGAAGAAGAAGAGACGCAATAATGGAAAAATACAAAAAGCAGAATCAGAAAATAGAACAAGCAGCTGGAAATGATGGAAAAGGCAAGGATGTGGAGATTCGTACTGACACTTTTAAAGCAGTTGATGGTAAGAGTGGTGATGTTGATGATGTGGAACCATCATTTTCTGTTGGGAAATCTCCACCGGAAAATGTAAATGTCGGCTCAGAGAAGGTACCTGGTGCTGGGGGCCTAGGCGAGGGTACTCCAAAGAGTGAGAGGTCAGCTGACAAGTATTGTGATGATATATTTGGTGAGACACCAACTGGAGTTCGGAAATCGGGAAAAGGAGATGGATTATTAATTGAGAGGGTTGGCCTGCATGACAACTGGGATGATGCAGAGGGCTATTACAGTTATCGGTTTGGTGAAATACTTGATGGCCGATACGAAGTTACTGCTGCACACGGGAAGGGTGTCTTTTCAACAGTTGTACGAGCTAAGAATCTGAAAACTGGTAATGGTGAGCCAGATGAAGTAGCAATAAAAATTATTCGTAATAATGACACCATGTACAAGGCTGGTTTGGATGAGTTGGTCATTTTAAAGAAATTAGTAGGTGCAGATCCGGATGATAAGCGTCACTGTGTTCGTTTCCTTTCAAGCTTTAAGCTAACTGCTGTGAGGGCATATGCAAAACAGCTTTTTATTGCACTGAAGCATCTCCGTAACTGTGGTGTTCTGCACTGTGATATAAAGCCTGACAATATGTTGGTGAATGAAGCAAAAAATGTATTAAAGCTTTGTGACTTTGGGAATGCCATGTTTGCTGGTAAAAATGAAGTAACACCATATCTCGTGAGTCGCTTTTATCGTGCCCCTGAAATAATTCTTGGATTGCAGTATGATCACCCATTGGATATTTGGTCTGTAGGCTGTTGTTTGTATGAATTGTATACAGGGAAGGTTCTTTTTCCGGGGCTCACAAACAACGACATGCTACGGCTTCACATGGAATTGAAGGGCCCTTTTCCAAAAAAGATGCTCCGTAAGGGAGCATTTACCGAACAACATTATGACCAGGACCTGAGTTTTCATGCCACAGAGGAGGATCCTGTAACAAAAAAGACCATAAAGCGGATGATTCTTAACATAAAGGCGAAAGATATTGGAACGATCATCAATGGCTCTCTTGGGGAAGATCCAAAAATGTTGGCCAATTTTAAAGATCTTCTAGATAAAATTTTTGTCTTGGATCCGGACAAGAGGTTGACAGTCTCACAAGCATTGAACCACCCATTCATCACTGGCAAGTGA 2853 0.4374 MATDGHDSRRKHHRSSSPDDHDKSSKRHKHRHHHSHRHRHGSKKHDEEIHYDGEIVAAVPSPSPVSDPVPHNHLADDDVEEGEILDDEPLGGEVGIGKKQIESDVESGEIEVKGGRDLRSEKKNPGLIAKSSITESEDFHNDRFIRPTSRSPVDDDSPNHSRDETQAGRDVQAGTDALGNGYLDALEAIRKEENSHKNVIESGEERHRVPGNSPLHDGYRSRSRSIGHTRDRSRSRSAVEEYVHPSSRHSMEQGSLYYTSRHKTEYDLDEERVSAYRREHRHSSKDLVEDDKPEHSTRYHSRDARDRATYRSRDRDVDLDLHREKKREETSRNKEVDWVRRREKERGRSHDRHRRDIEKDRSRERDEGRDRRRENERHRSRDTVYERDRRREMERDMNKDRTIAGERDRDWKSEWDYRNRERDNIKERERRDDRYQHNDKDVPNGKDKHTRRDDDNGDRYKRHSRHEENGHHTDRKRNYTMEEDGRKPKSEIEQDDVDEDTLQLPEQEEEDLNRIKEESRRRRDAIMEKYKKQNQKIEQAAGNDGKGKDVEIRTDTFKAVDGKSGDVDDVEPSFSVGKSPPENVNVGSEKVPGAGGLGEGTPKSERSADKYCDDIFGETPTGVRKSGKGDGLLIERVGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGKGVFSTVVRAKNLKTGNGEPDEVAIKIIRNNDTMYKAGLDELVILKKLVGADPDDKRHCVRFLSSFKLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHYDQDLSFHATEEDPVTKKTIKRMILNIKAKDIGTIINGSLGEDPKMLANFKDLLDKIFVLDPDKRLTVSQALNHPFITGK 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03614 950 Gene3D Phosphorylase Kinase; domain 1 633 717 - -
Vifa3g03614 950 MobiDBLite consensus disorder prediction 99 124 - -
Vifa3g03614 950 Pfam Protein kinase domain 734 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03614 950 MobiDBLite consensus disorder prediction 422 520 - -
Vifa3g03614 950 MobiDBLite consensus disorder prediction 562 608 - -
Vifa3g03614 950 Coils Coil 516 543 - -
Vifa3g03614 950 MobiDBLite consensus disorder prediction 25 41 - -
Vifa3g03614 950 MobiDBLite consensus disorder prediction 194 213 - -
Vifa3g03614 950 SMART serkin_6 662 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03614 950 MobiDBLite consensus disorder prediction 1 179 - -
Vifa3g03614 950 ProSiteProfiles Protein kinase domain profile. 662 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03614 950 MobiDBLite consensus disorder prediction 422 494 - -
Vifa3g03614 950 MobiDBLite consensus disorder prediction 194 407 - -
Vifa3g03614 950 SUPERFAMILY Protein kinase-like (PK-like) 649 949 IPR011009 -
Vifa3g03614 950 MobiDBLite consensus disorder prediction 221 247 - -
Vifa3g03614 950 FunFam Serine/threonine-protein kinase PRP4 homolog 733 948 - -
Vifa3g03614 950 MobiDBLite consensus disorder prediction 1 24 - -
Vifa3g03614 950 CDD STKc_PRP4 661 947 IPR044092 GO:0004674|GO:0006468|GO:0045292
Vifa3g03614 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 759 771 IPR008271 GO:0004672|GO:0006468
Vifa3g03614 950 FunFam serine/threonine-protein kinase PRP4 homolog 633 721 - -
Vifa3g03614 950 MobiDBLite consensus disorder prediction 135 169 - -
Vifa3g03614 950 MobiDBLite consensus disorder prediction 262 407 - -
Vifa3g03614 950 PANTHER DUAL SPECIFICITY PROTEIN KINASE 391 736 - -
Vifa3g03614 950 Gene3D Transferase(Phosphotransferase) domain 1 718 948 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03614 Vifa-Chr3 1051645400 1051651712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03614 740 948 MAP Kinase Gene Family AT3G45640 33.175 3.45e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vifa3g03614 Pkinase 2.2e-37 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03614 3 1051645400 1051651712 Vifa3g03614 3 1051645400 1051651712 ECH