LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g03599	ATGGTTTCTCTTTGGCCATTAGTTGCTCTAACTCTCTCTTCCTTTGTTCTAACTTGCCTTCTATGTTTAGCTGAAGAAACTAACTATTCTTCTTCCAAAATCGGTCGAGGCTACCGTTTGATATCCATTGAAGATACACCTGATGGTGCACTTGTAGGTCTCCTGCAAGTTAAGCAGAAGAACAATATTTATGGTGCTGACATTCCCCTTTTATGCTTCTACGTCAAGCACGAGACCGAGAATCGTTTGAGGGTACACATAACTGATGCAAACAACAAAAGGTGGGAGGTTCCTTATGATCTTTTGCCTAGGGAGCAACCACCACCTCTGAAGAGGTTGAAGAAGAAGAAGCCATTATCAGTTTCAGAGTATTCAAGCTCTGAGCTTGTTTTCAGTTACACTTCTGACCCATTTAGTTTTAAAGTGAAAAGAAAGTCCAATGGTGATACCCTTTTTGACTCAAATTCTAATGAATCAGACCCATTTGGTCCATTAGTACTCAAAGACCAATATTTGGAAATTTCTACCAAATTGCCTAAAGATGCTTCTTTATATGGTTTAGGAGAGAACACACAACCACATGGGATGAAGTTACATCCAAATGATCCTTACACTTTGTATACAACTGATATATCAGCTGTTAATCTCAATTCGGATTTATATGGATCACATCCTGTGTACATGGATCTCAGAAATGAAGGTGGAAAATCTCATGCACATGGTGTTTTGTTGTTGAATAGTAATGGAATGGATGTGTTTTACAAAGGGAACTATTTGACATACAAAATCATTGGAGGTGTTTTTGATTTTTACTTCTTTGCTGGACCATCTCCTCTGAATGTTGTTGATCAGTATACTACTTTAATTGGAAGACCTGCTCCAATGCCTTATTGGGCCTTTGGATTCCATCAATGCAGATGGGGTTATCACAACCTATCTGTGATAGAACATGTTGTTGAGAATTACAAGAAGGCCAAAATCCCACTTGATGTGATATGGAATGATGATGATCACATGGATGGACACAAGGACTTCACAGTCAATCCAGTTAGCTATCCACTTCCAAAGCTTTTAAGCTTCCTAGACAGAATTCACAGCATTGGCATGAAATATATTGTGATCAATGATCCCGGAATCGCTGTTGACACAAACTATGGTGTATACCAAAGGGGTATGGCTAATGATGTTTTTATCAAATATGAAGGTGAACCATTCATGGCTATGGTTTGGCCAGGAGCAGTTTACTTTCCTGATTTTCTCAATCCAAAAACAGTTTCTTGGTGGGGAGACGAGATTCGCCTCTTCCATGAACTTGTTCCTATTGATGGCTTATGGATCGACATGAATGAAGTTTCGAATTTCTGCACGGGAAAATGTACTATTCCAAAGGGAAGATTTTGTCCACTCCAAGGTGAAAAATTACCAAATTCAACGTGTTGCTTGGATTGTACAAACATCACAAGCACGATATGGGATGATCCTCCCTACAAAATCAATGCGTCCGGAAAGGAGGCTCCAATAGGCTTCAAAACTATAGCAACTAGCGCAGTTCATTATAACGGCGTGTTGGAATATGATGCTCATAGTCTTTTTGGTTTCTCCGAAGCCATTGCAACGCACAAAGCGCTTCTTGAACTTCAAGGTAAACGACCGTTTGTTTTGTCTCGTTCGACTTATGTAGGATCAGGCAAATATGCTGCTCATTGGACTGGTGACAACAAAGGAACATGGGAGGATTTAAGATATTCTATATCTACTGTTCTCAATTTCGGAATATTTGGTATGCCAATGGTTGGTGCAGATATATGTGGTTTCTATCCAGCGCCTACCGAAGAGCTTTGTAATAGGTGGATTGAAGTTGGTGCTTTCTATCCATTCTCAAGGGATCATTCAAGTGTTATTTCTCCTAGACAGGAGCTTTATCAATGGGAATCCGTAGCTGAATCGGCTAGAAATGCTTTGGGGATGAGATATAAGCTTCTACCCTATCTGTATACATTAAACTATGAGGCTCATATTAGTGGAGCCCCGATTGCTCGGCCTCTTTTCTTCTCGTTTCCAAATTTTGTTCGATGTTATGGCCTAAGCACTCAGTTCTTACTTGGAAGTGGCCTAATGATTTCTCCTGTTCTCGAGCGAGGGAAAACGGAAGTTAAAGCACTCTTTCCGCCCGGAACATGGTACAGCTTATTTGATTTGACACAAACCATTGTTTCAAGAGATGGAAACTATGTTACCCTTGATGCACCCTTGCATGAAATCAATGTGCATTTATATCAGAATACTATTCTTCCAATGCAGCAAGGTGGTATGGTATCTAAGGATGCCAGAATGACACCTTTTAGCCTCATTGTGACATTTCCAGCCGGTGCGAATGAAGGAGAAGCTAAAGGAAACTTGTTCATTGATGATGATGAGATGCCAGATATGAAGCTCGGAAACGGCTATTCGACCTACGTTGAATTCCATGCAAGTGTGAATGAAGGAACTGTGAAAATTTGGTCAGAAGTTCAAGAGGGAAAGTTTGCTTTAGATCAAGGTCTGGTTATTGAGACAATAAATGTGTTGGGATTGAGCTATGGAAGTGGAGAACTAGTTAGAATTGAGATAGATGGAGAACCATCAATTGGTGTCTCAAATGTGAAAGTTAGTACATATGAACATAAGTACTTGTACAAGGAAGGAGGTGGAGAAAAAAAGACAGTAACGGTTGGATTGAATGGCTTGAATATCCCTGTAGGTAAAGAATTTGCTCTTACATGGAAAATGGGATCATGA	2778	0.3999	MVSLWPLVALTLSSFVLTCLLCLAEETNYSSSKIGRGYRLISIEDTPDGALVGLLQVKQKNNIYGADIPLLCFYVKHETENRLRVHITDANNKRWEVPYDLLPREQPPPLKRLKKKKPLSVSEYSSSELVFSYTSDPFSFKVKRKSNGDTLFDSNSNESDPFGPLVLKDQYLEISTKLPKDASLYGLGENTQPHGMKLHPNDPYTLYTTDISAVNLNSDLYGSHPVYMDLRNEGGKSHAHGVLLLNSNGMDVFYKGNYLTYKIIGGVFDFYFFAGPSPLNVVDQYTTLIGRPAPMPYWAFGFHQCRWGYHNLSVIEHVVENYKKAKIPLDVIWNDDDHMDGHKDFTVNPVSYPLPKLLSFLDRIHSIGMKYIVINDPGIAVDTNYGVYQRGMANDVFIKYEGEPFMAMVWPGAVYFPDFLNPKTVSWWGDEIRLFHELVPIDGLWIDMNEVSNFCTGKCTIPKGRFCPLQGEKLPNSTCCLDCTNITSTIWDDPPYKINASGKEAPIGFKTIATSAVHYNGVLEYDAHSLFGFSEAIATHKALLELQGKRPFVLSRSTYVGSGKYAAHWTGDNKGTWEDLRYSISTVLNFGIFGMPMVGADICGFYPAPTEELCNRWIEVGAFYPFSRDHSSVISPRQELYQWESVAESARNALGMRYKLLPYLYTLNYEAHISGAPIARPLFFSFPNFVRCYGLSTQFLLGSGLMISPVLERGKTEVKALFPPGTWYSLFDLTQTIVSRDGNYVTLDAPLHEINVHLYQNTILPMQQGGMVSKDARMTPFSLIVTFPAGANEGEAKGNLFIDDDEMPDMKLGNGYSTYVEFHASVNEGTVKIWSEVQEGKFALDQGLVIETINVLGLSYGSGELVRIEIDGEPSIGVSNVKVSTYEHKYLYKEGGGEKKTVTVGLNGLNIPVGKEFALTWKMGS	925

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g03599	925	SUPERFAMILY	(Trans)glycosidases	281	675	IPR017853	-
	Vifa3g03599	925	CDD	GH31_N	172	290	-	-
	Vifa3g03599	925	SUPERFAMILY	Galactose mutarotase-like	35	278	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Vifa3g03599	925	Pfam	Glycosyl hydrolases family 31	271	764	IPR000322	GO:0004553\|GO:0005975
	Vifa3g03599	925	Gene3D	glycosyl hydrolase (family 31)	32	291	-	-
	Vifa3g03599	925	FunFam	Alpha-glucosidase 1	660	760	-	-
	Vifa3g03599	925	CDD	GH31_MGAM_SI_GAA	290	672	-	-
	Vifa3g03599	925	ProSitePatterns	Glycosyl hydrolases family 31 signature 2.	599	629	IPR030459	-
	Vifa3g03599	925	FunFam	Maltase-glucoamylase, intestinal	292	659	-	-
	Vifa3g03599	925	ProSitePatterns	Glycosyl hydrolases family 31 active site.	443	450	IPR030458	-
	Vifa3g03599	925	Gene3D	-	762	925	IPR013780	-
	Vifa3g03599	925	Pfam	Galactose mutarotase-like	182	250	IPR025887	-
	Vifa3g03599	925	Gene3D	-	660	759	IPR013780	-
	Vifa3g03599	925	PANTHER	ALPHA-GLUCOSIDASE	32	871	-	-
	Vifa3g03599	925	Pfam	N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase	54	180	IPR031727	-
	Vifa3g03599	925	SUPERFAMILY	Glycosyl hydrolase domain	677	758	-	-
	Vifa3g03599	925	Gene3D	Glycosidases	292	659	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g03599	Vifa-Chr3	1045924529	1045927609	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g03599	22	924	Glycoside Hydrolase	AT1G68560	71.114	0.0	1380

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa3g03599	3	1045924529	1045927609	Vifa3g03599	3	1045924529	1045927609	ECH