Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03597 ATGTTGGGTTCTAGAAAATCTAGAGCTAAACCAAGGCCTCAACCTATGCCTATGAAGGTGACAAGGAAATTGCGGATTGTTTATAATGATCCTTATGCAACTGAATCATCATCCGAAGATGAGTCGCAGCCGAGGCAAATAAGGCGGGGCTGTGTCGAGATGCCTCTGCCTTTTATCCGTGATGTTTCTGCCGTGGCTGTTACTCAAGATTCATTCTATGGGAAGGAGAACATTGCAGCCAGAACGAAGAGTTCTCTGTCAGTGAGACGAGTTCAAACTAAGAGGAGGAGGTGTGTTCCTCCTGCTACTCCGACTACTAGAAGACAATCTTCCGCGAAGTATCGAGGAGTTCGTATGAGGAAATGGGGGAAATGGGCTGCGGAGATTCGTGATCCGTTCAAAGGTGCTAGAATCTGGCTTGGAACTTACAACACTGCTGAAGAAGCTTCTCATGCTTATGAATCCAAAAGACTTCAATTTGAAATGGAAATGGAAGCTAAAGCAAATGAAAAAGAAGCATGCGTCAACCATAGTTGCTCTGCATCAGCACCAGCTGCAACTACATCAACTACATCATCCGCGGATGCTGCTAATGCTTCTGCGTCGGAGAAGTTTTCAACTACCGAAGATTCTGAGATGTTCTCGCATGCATCACCTTCTTCGGTGCTTGAATTGGATACTCTAGCATCCAATATGATGGAGAAGGTTGATGCTGTTGTCGAAGATGAACCTAGTGATATGATGGCTTGCCAACTTGAAGAGCTAGAAATTCCAGATCTAAGTGTTTTGAACTTGCCTGAGCCACCTGTTGCTGCTGCAGAGAATCCAATTGGGACTGATCTCAATTTTGGTGAGTTTGGATTTGATTTTGATCGGTTTAACATCGATGATTTTGGACAGGATTTTGATGAGTTTGGTGACTTTAGGGATATTCACATTCATGGCTTTGATGACAATGAGCCTAGTGAACTTCCTGATTTTGATTTTGGCATAGAAGACGATGAGTTTGCTGGTTGGATTGAAGAACCACTCCAACACAACATATCATGTGTCTAA 1056 0.4366 MLGSRKSRAKPRPQPMPMKVTRKLRIVYNDPYATESSSEDESQPRQIRRGCVEMPLPFIRDVSAVAVTQDSFYGKENIAARTKSSLSVRRVQTKRRRCVPPATPTTRRQSSAKYRGVRMRKWGKWAAEIRDPFKGARIWLGTYNTAEEASHAYESKRLQFEMEMEAKANEKEACVNHSCSASAPAATTSTTSSADAANASASEKFSTTEDSEMFSHASPSSVLELDTLASNMMEKVDAVVEDEPSDMMACQLEELEIPDLSVLNLPEPPVAAAENPIGTDLNFGEFGFDFDRFNIDDFGQDFDEFGDFRDIHIHGFDDNEPSELPDFDFGIEDDEFAGWIEEPLQHNISCV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03597 351 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 235 - -
Vifa3g03597 351 SMART rav1_2 113 167 IPR001471 GO:0003700|GO:0006355
Vifa3g03597 351 MobiDBLite consensus disorder prediction 183 217 - -
Vifa3g03597 351 Pfam AP2 domain 113 161 IPR001471 GO:0003700|GO:0006355
Vifa3g03597 351 CDD AP2 112 153 IPR001471 GO:0003700|GO:0006355
Vifa3g03597 351 SUPERFAMILY DNA-binding domain 113 160 IPR016177 GO:0003677
Vifa3g03597 351 ProSiteProfiles AP2/ERF domain profile. 113 171 IPR001471 GO:0003700|GO:0006355
Vifa3g03597 351 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Vifa3g03597 351 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Vifa3g03597 351 Gene3D AP2/ERF domain 112 177 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03597 Vifa-Chr3 1044757166 1044758221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03597 15 350 AP2-EREBP Transcription Factor Family AT1G68550 30.833 9.30e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa3g03597 AP2 4.1e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03597 3 1044757166 1044758221 Vifa3g03597 3 1044757166 1044758221 ECH