Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03591 ATGATGAACAAAAGTGAGAGAGAGTGTAGAAGAAGAACTGATAGAGAACTTTCAAAGCTCTTCATCTTCTATCATCACTCAACTATAGCCTCTATATATTTTCTCTTTCTGTTAGAGTGGTACCATAACCCCATCACCATGAGACCAGATGGAAATCAATTAGATCTTAACAATCTCCCTGATGACAACTATAGAGATCATCATTCTAAACAACTTCTTCCTAACATCATCTCCTCGCCACCTGTTACAAGTTTTAAGGAAAAAGAAGGGAACGAAGATGATAGAAAAGACGAGGTTGAAAAGGTCTATGAATGTAGATTTTGTTCCCTTAAATTCTGTAAGTCTCAGGCTCTTGGAGGACACATGAACCGTCATCGTCAAGAGAAAGAAACAGAAAAGTTGAACAATGCTCGTCAGCTTCTCTTACGTAATGATCAAAACCTTGTTGCTCAAGCTGCCCTTCACATAGGATGCTATCCTACAATGCCTATGAGATTTCAACCTTCTTTCTCTAGATCATCATCTTCAAATCAACCACCATCTCAAGTTCAACAATACATGTATAATTCATCTTCACAACCAATTTCTTTCCCTACACATTTCCTTCCACAACATCAAATGAATGATTACCGTGTGAGCCACCAGCAACAATATGTGGCAGGTGGGGGAGGAGGTGACAAGTCAAGCTACACGTGCATAGGTGCACCCATTGGACAAAGTTTTCTAGATCATACTGCATCGATCAATCGATTTCAAGATGGTAATTTGTAA 771 0.3904 MMNKSERECRRRTDRELSKLFIFYHHSTIASIYFLFLLEWYHNPITMRPDGNQLDLNNLPDDNYRDHHSKQLLPNIISSPPVTSFKEKEGNEDDRKDEVEKVYECRFCSLKFCKSQALGGHMNRHRQEKETEKLNNARQLLLRNDQNLVAQAALHIGCYPTMPMRFQPSFSRSSSSNQPPSQVQQYMYNSSSQPISFPTHFLPQHQMNDYRVSHQQQYVAGGGGGDKSSYTCIGAPIGQSFLDHTASINRFQDGNL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03591 256 PANTHER ZINC FINGER PROTEIN JAGGED 81 240 IPR045320 GO:0003700
Vifa3g03591 256 Gene3D Classic Zinc Finger 83 156 - -
Vifa3g03591 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Vifa3g03591 256 Coils Coil 124 144 - -
Vifa3g03591 256 FunFam Zinc finger protein STAMENLESS 1 78 151 - -
Vifa3g03591 256 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Vifa3g03591 256 SUPERFAMILY beta-beta-alpha zinc fingers 100 131 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03591 Vifa-Chr3 1037200410 1037202367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03591 47 238 C2H2 Transcription Factor Family AT1G13400 42.925 4.88e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g03591 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03591 3 1037200410 1037202367 Vifa3g03591 3 1037200410 1037202367 ECH