Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03572 ATGGAAATCGCCTCCTCCCGCCACCGCCGGAAAGACAAAGTCCTTGTCATCATGGGCGCCACCGGCTCCGGAAAATCCCGCCTTTCAGTAGAACTCGCCAACCTCTTCCCCTGCTTCGAAATAATCAACTCCGATAAAATCCAAGTCTACAAAGGACTCGACATCACCACCAACAAGATCCCATTTCATCAACGCAACAACATCCCACATCATCTCATCGGCGATATCGATCCCTCCCACGGCGAGTTCTCCCCTTCAGATTTCCGCCGCCACGCCGGAGATATAATCTCCGATATAATTTCCCGGAGGAAGCTCCCCATTATCGTCGGAGGGTCCAACTCATTCATTCACGCTCTCCTTGTAGAACGATTCAACCCTGAGTCAAACATCTTCGATGAAGACTCTTCATCTTCTTCATCATCATCAAAAACAATATCCTCGGATTTAAGGTACAAATGTTGTTTTCTCTGGATGGATATATCATTTCCTGTATTATCCGAATATTTGCTGAAACGAGTCGACGACATGTTTGACTCGGGAATGGTGGACGAGTTGGCTGAGTTTTATAAACCCGGTTCGGATAACCCGGATAACCGAACCGGTTTGAGAAAAGCAATCGGAGTACCCGAGTTCGACCGGTTTTTTATCCAATATCCACCAGGTGAACCACTCATTGAAGACGAAGTTCATAATCCTATGCGAGAAGGTGCATACGAGGAAGCAGTGAAGGCGATTAAAGATAACACGTGTCAGCTAGCCAAGAGACAGATAGGGAAGATCCTACGGTTAAAACGGGCTGGGTGGGACCTACGGAGACTCGATGCCACGGAGGCGTTTAGGGCGGTGCTGACATCAGATTCTCACGGCGGTGACGGCGGTGACGGCGGAGAGGGATATTCCGGTATATGGAAAAAACAAGTGTTGGAACCAAGCGTGAAGATTGTGAAGCGATTCTTGATGGAGTAG 966 0.4855 MEIASSRHRRKDKVLVIMGATGSGKSRLSVELANLFPCFEIINSDKIQVYKGLDITTNKIPFHQRNNIPHHLIGDIDPSHGEFSPSDFRRHAGDIISDIISRRKLPIIVGGSNSFIHALLVERFNPESNIFDEDSSSSSSSSKTISSDLRYKCCFLWMDISFPVLSEYLLKRVDDMFDSGMVDELAEFYKPGSDNPDNRTGLRKAIGVPEFDRFFIQYPPGEPLIEDEVHNPMREGAYEEAVKAIKDNTCQLAKRQIGKILRLKRAGWDLRRLDATEAFRAVLTSDSHGGDGGDGGEGYSGIWKKQVLEPSVKIVKRFLME 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03572 321 Gene3D - 11 319 IPR027417 -
Vifa3g03572 321 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 11 319 IPR039657 -
Vifa3g03572 321 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 270 - -
Vifa3g03572 321 Pfam IPP transferase 141 257 - -
Vifa3g03572 321 Pfam IPP transferase 48 124 - -
Vifa3g03572 321 FunFam Adenylate isopentenyltransferase 162 270 - -
Vifa3g03572 321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 191 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03572 Vifa-Chr3 1030037909 1030038874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03572 17 120 C2H2 Transcription Factor Family AT2G27760 47.115 5.85e-26 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03572 3 1030037909 1030038874 Vifa3g03572 3 1030037909 1030038874 ECH