Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03563 ATGCCTGCGAAGGAAGATAGCTCGGAGAAAGAGAAGTCTCTTGATCTCTTTCTAAAGATCGGTTTAGACGAACGCACAGCTCGAAACACCATCGCCAATAACAAAGTCACTACCAATCTCACTGCTGTTATCCACGAGGCCGGTGTTACCGAAGGATGCAGCCGATCGGTTGGAAACCTTATTTATACGGTTGCAACCAAGTACCCTGGAAATGCCTTGCCGCATCGCCCAACATTGCTGCAATATGTAGTTTCTTCCAAGGTGAAAACAACAGCACAGTTGGACGCGGCACTATCTTTTCTTGCTACTACGGGAGTTGAGAATCTTGATTTGAATAAATTTGAAGAAGCTTGTGGTGTTGGTGTTGAGGTTTCAACAGAAGATATCACACATGCTGTTAATGAAGTTTTTGAGGAGAACAAGGCTTCAATTCTGGAACTACGCTATCGAACAAATGTTGGTGAATTACTTGGGCACGTGCGGAAAAGGCTCCCATGGGCTGATGCAAAAGCTGTGAAGCAACTCGTTGATGCAAAATTATATGAACTACTTGGTGATAAAACAGCAGCTGACAATGAAAAACCTTCTAAAAAGAAGAAGGAGAAGCCTGCTAAAGTAGAGGATACGGCAGCACCTGTTGCTACTCCTGAAAAGGCATCTGAAGAAGATCTTAATCCATATTCGATATTCCCTAATCCCGAGGAGAATTTGAAGGTGCATACTGAAGTTCCTTTTAGTGATGGTTCTATTCTGAGATGTTGCAATACAAAGGCGCTTCTTGACAAGCACTTGAAAGTAACAGGTGGGAAAGTTTTGACCCGATTCCCTCCTGAGCCTAATGGATATTTGCATATTGGTCATGCAAAGGCAATGTTTATTGATTTTGGTCTGGCAAAAGACAGAGATGGAGGTTGCTATCTGAGGTATGATGATACAAATCCTGAAGCAGAAAAGAAAGAGTATATTGATCACATTGAAGAAATTGTCCAGTGGATGGGGTGGAAACCATTCAAGATTACTTACACAAGTGATTATTTCCAAGAACTGTATGAATTAGCTGTGGAGCTCATAAGAAAGGGTTGTGCTTATATTGATCATCAGACACCTGATGAAATAAAGGAGTATAGGGAGAAGAAGTTGAACAGTCCCTGGAGAGACAGACCAGTTTCAGAATCGTTGAAACTTTTTGAAGATATGAGAAGTGGTCTTATAGAAGAAGGAAAAGCCACACTTCGAATGAAGCAAGACATGCAGAGCGATAACTACAATATGTATGACCTCATTGCATACAGAATTAAGTTTACTCCACACCCTCATGCTGGAGACAAATGGTGTATCTACCCAAGTTATGATTATGCTCACTGCATTGTGGATTCACTTGAGAATGTCACACATTCACTGTGTACTCTTGAGTTTGAGACACGTCGTGCTTCATACTATTGGTTGTTACATGCATTAGGTATTTACCAACCTTATGTATGGGAGTATTCGAGGTTAAACATTTCTAACACAGTTATGTCAAAGCGCAAGCTTAATCGGCTGGTTACTGAAAACTGGGTTGATGGGTGGGATGATCCCCGCCTGATGACATTAGCTGGTTTGCGGCGTAGAGGCATGACTTCAACAGCAATCAATTCTTTTGTTCGGGGAATTGGAATCACTAGAAGTGATGGCACTTTAATATCCGTGGGTCGCCTTGAGCATCATGTTAGGGAAGAAATGAACAAAACCGCTCCTCGGACAATGGCTGTCCTACATCCACTCAAGGTTGTTATTACTAATCTTGAAGCCAACTCAACAATTGAGGTTGATGGAAAAAAATGGCCTGATGCTCAAGCTGATGACCCATCTGCTTTCTACAAGGTTCCTTTTTCCAACGTTGTATATATTGAACGCACAGATTTCCGTATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGTAAATCTGTGATACTCAGATATGCGTTTCCTATAAAATGCACTGAAGTTATCCTAGCTGATGATAATGAGACCATTCTTGAAATTCGTGCCGAGTACGATCCTTCAAAGAAGACAAAGCCTAAGGGTGTTCTCCATTGGGTTGCACAAACTTCTCCTGAAGTTGATCCGTTCAAGATTGAAATCAGGCTGTTTGACAGGCTGTTTCTATCAGAGAATCCTGCTGAACTTGACAATTGGCTTGGCGATCTTAACCCTAATTCCAAAGTGGTAATTCCAAATGCATTTGGATTGTCCTCTCTCCGGGACGCAAAAGTTGGGGACAGTTTCCAGTTTGAAAGATTAGGCTATTTTACGGTCGACCAGGACTCTACTCCAGAAAAACTTGTTTTTAATAGAACCGTCACATTAAAGGACAGCTATAGTAAGGGTGGAAAATAG 2385 0.4168 MPAKEDSSEKEKSLDLFLKIGLDERTARNTIANNKVTTNLTAVIHEAGVTEGCSRSVGNLIYTVATKYPGNALPHRPTLLQYVVSSKVKTTAQLDAALSFLATTGVENLDLNKFEEACGVGVEVSTEDITHAVNEVFEENKASILELRYRTNVGELLGHVRKRLPWADAKAVKQLVDAKLYELLGDKTAADNEKPSKKKKEKPAKVEDTAAPVATPEKASEEDLNPYSIFPNPEENLKVHTEVPFSDGSILRCCNTKALLDKHLKVTGGKVLTRFPPEPNGYLHIGHAKAMFIDFGLAKDRDGGCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWKPFKITYTSDYFQELYELAVELIRKGCAYIDHQTPDEIKEYREKKLNSPWRDRPVSESLKLFEDMRSGLIEEGKATLRMKQDMQSDNYNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENVTHSLCTLEFETRRASYYWLLHALGIYQPYVWEYSRLNISNTVMSKRKLNRLVTENWVDGWDDPRLMTLAGLRRRGMTSTAINSFVRGIGITRSDGTLISVGRLEHHVREEMNKTAPRTMAVLHPLKVVITNLEANSTIEVDGKKWPDAQADDPSAFYKVPFSNVVYIERTDFRMQDSKDYYGLAPGKSVILRYAFPIKCTEVILADDNETILEIRAEYDPSKKTKPKGVLHWVAQTSPEVDPFKIEIRLFDRLFLSENPAELDNWLGDLNPNSKVVIPNAFGLSSLRDAKVGDSFQFERLGYFTVDQDSTPEKLVFNRTVTLKDSYSKGGK 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03563 794 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 169 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Vifa3g03563 794 SUPERFAMILY Ribosomal protein L25-like 578 788 IPR011035 GO:0006412
Vifa3g03563 794 Gene3D HUPs 247 581 IPR014729 -
Vifa3g03563 794 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 578 769 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Vifa3g03563 794 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 172 243 IPR007638 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Vifa3g03563 794 FunFam Glutamine--tRNA ligase cytoplasmic 124 192 - -
Vifa3g03563 794 PRINTS Glutamyl-tRNA synthetase signature 303 316 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vifa3g03563 794 PRINTS Glutamyl-tRNA synthetase signature 274 286 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vifa3g03563 794 PRINTS Glutamyl-tRNA synthetase signature 448 458 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vifa3g03563 794 Pfam tRNA synthetases class I (E and Q), catalytic domain 270 575 IPR020058 GO:0004812|GO:0005524|GO:0043039
Vifa3g03563 794 Gene3D - 123 192 IPR042559 -
Vifa3g03563 794 NCBIfam glutamine--tRNA ligase 271 791 IPR004514 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Vifa3g03563 794 PANTHER GLUTAMINE-TRNA LIGASE 19 788 - -
Vifa3g03563 794 MobiDBLite consensus disorder prediction 191 229 - -
Vifa3g03563 794 CDD GlnRS_core 270 580 - -
Vifa3g03563 794 FunFam Glutamine--tRNA ligase cytoplasmic 9 122 - -
Vifa3g03563 794 FunFam Glutamine--tRNA ligase 582 701 - -
Vifa3g03563 794 SUPERFAMILY Nucleotidylyl transferase 270 584 - -
Vifa3g03563 794 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 277 288 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vifa3g03563 794 Gene3D - 7 122 IPR042558 -
Vifa3g03563 794 Gene3D Ribosomal Protein L25; Chain P 703 787 IPR020056 -
Vifa3g03563 794 MobiDBLite consensus disorder prediction 191 207 - -
Vifa3g03563 794 FunFam Glutamine--tRNA ligase cytoplasmic 240 581 - -
Vifa3g03563 794 Gene3D Ribosomal Protein L25; Chain P 582 702 IPR020056 -
Vifa3g03563 794 FunFam Glutamine--tRNA ligase cytoplasmic 702 787 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03563 3 1023709842 1023723085 Vifa3g03563 3 1023709842 1023723085 ECH