Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03550 ATGGATAACAACCACCACGATCACTACAACAATAAAACCACCTCCCAAACACGCCTTAAGCTCTTCGGCTTCCACGTCCAAGAAGACGAAACCATGCACGATAATCTCCAAGACTCAACAAACAAACCCACTTCTTCTTCAACCTCAACTTCCCCTTCAAGATCACCGGACTCCTCCGGTGCCGGCGAAGCCTTTCCACCTTCCTCCGGTGAGAGAAAATACGAGTGTCAATACTGTTGTAGAGAGTTCGCAAACTCACAAGCACTCGGTGGACACCAGAACGCGCATAAGAAAGAGCGTCAACAACTCAAACGTGCTCAGTTACAAGCTAACCGAAACGCCGCCGTTTCGTTTGTTAGAAACCCTATGATCTCCGCCTTTACTCCTCCACCGCACTTGCTCGCTCCGCCGGGGTCACTGATGGTTACACCTTCTCCTTCGTCTTGGGTTTACCTCCCGCCGCGTTCTGCTCCGCCTCCGTTCCACGTGTCGGTTTCACACGGTTGCGTTTTCCCGTCGGGAAACGGAAACACCATGATGAGTAGTAACAATAATAATAGTAATTTTTCTGTTGTGAAATCTGCGGGTGCAGGGATGTTTCCGTGTGTTGGCGTTGTAGGGGATTCAGTGTCTGCATTGTCAACGTTGCAGGTACAAGCCCGGGCCCACATGATTGATGGGCCCTGTTTGAGTAGGTTCAGTGGGCCCAATTTCGATGATGCATTGGGCTTGGATTTGCACCTTAGTCTCGCGCCAGCTGCGGCTCGCTCTTACGGCTCGGCTCAGTTTGAGTATTCTAGATGCTCCCCTTAG 813 0.5117 MDNNHHDHYNNKTTSQTRLKLFGFHVQEDETMHDNLQDSTNKPTSSSTSTSPSRSPDSSGAGEAFPPSSGERKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQANRNAAVSFVRNPMISAFTPPPHLLAPPGSLMVTPSPSSWVYLPPRSAPPPFHVSVSHGCVFPSGNGNTMMSSNNNNSNFSVVKSAGAGMFPCVGVVGDSVSALSTLQVQARAHMIDGPCLSRFSGPNFDDALGLDLHLSLAPAAARSYGSAQFEYSRCSP 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03550 270 PANTHER ZINC FINGER PROTEIN 5 6 254 IPR044299 GO:0010090
Vifa3g03550 270 MobiDBLite consensus disorder prediction 37 58 - -
Vifa3g03550 270 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Vifa3g03550 270 Gene3D Classic Zinc Finger 64 121 - -
Vifa3g03550 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 101 IPR013087 -
Vifa3g03550 270 MobiDBLite consensus disorder prediction 29 69 - -
Vifa3g03550 270 SUPERFAMILY beta-beta-alpha zinc fingers 70 101 IPR036236 -
Vifa3g03550 270 FunFam Zinc finger protein 6 66 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03550 Vifa-Chr3 1019740463 1019741275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03550 9 254 C2H2 Transcription Factor Family AT1G68360 45.420 1.39e-52 169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03550 3 1019740463 1019741275 Vifa3g03550 3 1019740463 1019741275 ECH