Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03547 ATGGGTTCTAAGATGGAAGGTACTTCTACACCAGCTGTTCGACGGGATCCTTATGAGGTTTTATCCGTTTCGAGGGAATCAACCGATCAGGAAATTAAAACCGCTTACAGAAAGCTTGCTCTAAAGTATCATCCTGACAAGAATGCCAGCAATCCTGAAGCTTCAGAACTATTCAAAGAGGTTGCATATTCTTATAATATCTTATCTGACCCAGAGAAGAGAAGGCAGTATGACAGTGCAGGATTTGAGGCATTGGATGCTGATAGCATGGACATGGAAATCGATTTATCTAATCTTGGGACTGTGAACACGATGTTTGCAGCTTTATTCAGCAAGCTTGGTGTCCCTATCAAGACTACCATTTCAGCTAATGTTCTTGAAGAGGCTTTGAATGGCACAGTTACTGTCAGACCCCTTCCAATTGGAACATCAGTTAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGCGTGACAATAAGTGAGCAGCAAGCTCAGTCAGGGATTGTAGTTAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTATTTCGAACAAGATGCAAACGGTGGCTATGGTTTGGCCTTGCAGGAAGATAGTGAGAAGACTGGGAAGGTGACATCTGCAGGAATGTACTTCTTACATTTTCAAGTGTACCGAATGGATTCAACCGTGAATGCGTTAGCAATGGCAAAGGATCCTGAAGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTATCGGAACTAAAGCCTGGCACACATATATTTGCTGTTTATGGAGATAACTTCTTTAAGACAGCTAGCTATACAATTGAAGCAGTATGTGCAGAAACACTTGAAGATACCACCGAAAAGCTTAAGGATATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTGCGCCAATTCGAAACAGAGTATAGAAAGGCATTGGCACGCTATCAAGAAGTGACAGACAGATACACAAAAGAAAAACAGTCTGTAGATGAGCTTCTGAAACAAAGGGATGGTATCCATTCGACCTTCACCATTGTTAAGCCAACCAATATTAGTGGAAGTGGTAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCCGGTGAAGATTCCAAAGGTGAGAGCCCCGGGGAAGATGCAGGGTCAGATGGCAGGGATAAATCAGGCAAAAAGAAATGGTTCAACCTTAATCTTAAGGGTTCAGGTTCGGGTTCTGATAAGAGGTTGATATGA 1251 0.4173 MGSKMEGTSTPAVRRDPYEVLSVSRESTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTISEQQAQSGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAETLEDTTEKLKDIEAQILRKRNELRQFETEYRKALARYQEVTDRYTKEKQSVDELLKQRDGIHSTFTIVKPTNISGSGSNLSNGSSSKISGEDSKGESPGEDAGSDGRDKSGKKKWFNLNLKGSGSGSDKRLI 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03547 416 FunFam Chaperone protein dnaJ 16 1 98 - -
Vifa3g03547 416 ProSiteProfiles dnaJ domain profile. 16 81 IPR001623 -
Vifa3g03547 416 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Vifa3g03547 416 MobiDBLite consensus disorder prediction 377 399 - -
Vifa3g03547 416 PRINTS DnaJ domain signature 18 36 IPR001623 -
Vifa3g03547 416 PRINTS DnaJ domain signature 36 51 IPR001623 -
Vifa3g03547 416 PRINTS DnaJ domain signature 73 92 IPR001623 -
Vifa3g03547 416 PRINTS DnaJ domain signature 53 73 IPR001623 -
Vifa3g03547 416 Pfam DnaJ domain 16 78 IPR001623 -
Vifa3g03547 416 SMART dnaj_3 15 73 IPR001623 -
Vifa3g03547 416 MobiDBLite consensus disorder prediction 1 24 - -
Vifa3g03547 416 MobiDBLite consensus disorder prediction 356 416 - -
Vifa3g03547 416 CDD DnaJ 16 70 IPR001623 -
Vifa3g03547 416 Gene3D DnaJ domain 2 98 IPR036869 -
Vifa3g03547 416 Coils Coil 286 341 - -
Vifa3g03547 416 MobiDBLite consensus disorder prediction 356 376 - -
Vifa3g03547 416 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 3 407 - -
Vifa3g03547 416 SUPERFAMILY Chaperone J-domain 15 86 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03547 Vifa-Chr3 1018630234 1018635160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03547 7 88 C2H2 Transcription Factor Family AT1G74250 42.529 1.14e-13 70.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03547 3 1018630234 1018635160 Vifa3g03547 3 1018630234 1018635160 ECH