Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03543 ATGACAACTCACAAACTCGTATTGATCATTACAAATCCTTCAAACGAACACGAGTTTCTCCTCGTGAAGCAGTCGCGTCCTCCCAAATTCAACGATGAAGAATACGATTCTTTCGTTGATTCTGATCTATGGGACTTGCCTTCAGTGCAGTTGAATCCACTGCAACCAGAATCGGAACCCTCGGTTGAGGTTGAGATTTCAGACTCAGATTCTGAGGAGTTCGATTTCAGGGAATTCGATGTCCGTTCTGCTCTTGACGAGGTGTTTGGACAATTAGGGTTTGGGACAGTTGAAAAGGGAGAGTGGAGGTTTCATAAGTATGTGAAGGAGGCTGCGTTCGGACCTGGTTTGCCTGTTAACACGGTTTTCATTGTTGGGAAAGTAGTAGATGAGGTCAAGGAGTTATCAGATACGTATAAATGGATGTCCATTCAAAGCTGTCTTAACTGGCTTCTAGATGTGATTCCACATGGTGATGATCGTATTGGACCATTGATAGTTGTTGGTCTTATAAATGACTCGTCTGTTTCTGCAAACCGGAAAGTCCCTCCAGCCATCAACTACCAGGAGTACCCGACTGGTGTTATACTTATTCCTATGGGAAGTAGGACGGCAAGGCCTTTTCAAACAACAAACTTGGTGGTGTTTGCACCTGAGAATGTTTCAAATGCTTCCAAGGACAATAAATACATTGCTTCTGGAGATGCACTAATAGTTGATCCAGGATGTCTGTCAGAATTCCATGGAGAGCTAAAGAAAATTGTTACTGCTTTGCCAAGAAGACTAATGGTTTTTGTTACCCATCATCATCGAGACCATGTAGATGGTCTCTCGGTTATACAGAAGTGCAATCCTGATGCAATTTTGTTAGCTCATGAGAATACAATGCGACGCATAAGGAGAGATGATTGGTCACTCAGCTATACCTCGGTTTCCGGAGATGAAGACATTTACATTGGTGGTCAGAAGTTGAAAGTTATTTTTGCACCGGGACATACAGATGGCCATATGGCATTGCTTCATGTGAATACACATTCCTTAATTGTAGGTGATCATTGTGTGGGTCAGGGAAGTGCTCTCTTGGACATAGGTGCTGGTGGAAATATGTCTGATTATTTCCAAACCACATACAAATTTCTGGAGCTTTCACCACATGCTTTGATACCTATGCACGGGAGAGTTAATGTCTGGCCAAAGAACATGTTGTGTGAATATCTAAAGAACCGTAGGAGTAGAGAAGCTAGTATCTTAAAAGCTATTGAAGGTGGAGCAAAGACATTGTTTGACATTGTTGCATATGTATATGCTAATGTTGACCGACGTGCCTGGATTGCTGCATCATCAAATGTGAGGCTTCATGTGGATCATCTTGCCCAGCAAAATAAATTGCCAAAGGATTTCTCTCTAGAAATTTTCTATGCCAGTGTGGATGAATTTGGTGACATGTTGGGTAAATTATAG 1461 0.4209 MTTHKLVLIITNPSNEHEFLLVKQSRPPKFNDEEYDSFVDSDLWDLPSVQLNPLQPESEPSVEVEISDSDSEEFDFREFDVRSALDEVFGQLGFGTVEKGEWRFHKYVKEAAFGPGLPVNTVFIVGKVVDEVKELSDTYKWMSIQSCLNWLLDVIPHGDDRIGPLIVVGLINDSSVSANRKVPPAINYQEYPTGVILIPMGSRTARPFQTTNLVVFAPENVSNASKDNKYIASGDALIVDPGCLSEFHGELKKIVTALPRRLMVFVTHHHRDHVDGLSVIQKCNPDAILLAHENTMRRIRRDDWSLSYTSVSGDEDIYIGGQKLKVIFAPGHTDGHMALLHVNTHSLIVGDHCVGQGSALLDIGAGGNMSDYFQTTYKFLELSPHALIPMHGRVNVWPKNMLCEYLKNRRSREASILKAIEGGAKTLFDIVAYVYANVDRRAWIAASSNVRLHVDHLAQQNKLPKDFSLEIFYASVDEFGDMLGKL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03543 486 Gene3D - 399 468 IPR036388 -
Vifa3g03543 486 Pfam Beta-lactamase associated winged helix domain 426 462 IPR041516 -
Vifa3g03543 486 FunFam Metallo-hydrolase/oxidoreductase superfamily protein 216 397 - -
Vifa3g03543 486 FunFam Metallo-hydrolase/oxidoreductase superfamily protein 399 472 - -
Vifa3g03543 486 SMART Lactamase_B_5a 225 391 IPR001279 -
Vifa3g03543 486 SUPERFAMILY Metallo-hydrolase/oxidoreductase 233 464 IPR036866 -
Vifa3g03543 486 Gene3D - 225 398 IPR036866 -
Vifa3g03543 486 PANTHER ENDORIBONUCLEASE LACTB2 139 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03543 Vifa-Chr3 1017854855 1017863450 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03543 3 1017854855 1017863450 Vifa3g03543 3 1017854855 1017863450 ECH