Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03500 ATGGACTCGAATTCATCTAGCTTTCTTTTGAACTCTTCGAATTTTCACTCGGTTTTCTACCAACATAAACACGATGACGGCATAATTGATCTTGGTCTTAGTCTCGGAACGGTTCATTATGATGCTTATAATTCTTCAACCAACTTGTATGATGATGACATTATGGAATGGCCTAATGTCAAGAATTCAAGCACGGCGCATTCGAGATCTGTTCAAGAAAGCTTTGATGAAGAGATAGAGGGGGTTCAGAGTAATGAGAGATGGGCTTATGTGAAGGTTAACATGGATGGAGTCTCCATTGGTAGGAAAATTTGTATTCTTGATCATGGAGGATATTCAAGTCTAGCAATTCAATTAGAGGATATGTTTGGTAGTCAAACAATTTCTGGTATAAGATTGTTCCAATCTGGATCAGAGTATTCATTATTCTATAAAGATAGAGAAGATAATTGGAGGGCTGTTGGTGATGTTCCTTGGAAGGAGTTTGTAGAATGCGTGAAAAGGCTAAGGATTGCAAGAAAGAATGAAGGCTATGTTAATTGA 543 0.3757 MDSNSSSFLLNSSNFHSVFYQHKHDDGIIDLGLSLGTVHYDAYNSSTNLYDDDIMEWPNVKNSSTAHSRSVQESFDEEIEGVQSNERWAYVKVNMDGVSIGRKICILDHGGYSSLAIQLEDMFGSQTISGIRLFQSGSEYSLFYKDREDNWRAVGDVPWKEFVECVKRLRIARKNEGYVN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03500 180 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 48 176 IPR003311 GO:0005634|GO:0006355
Vifa3g03500 180 ProSiteProfiles PB1 domain profile. 88 176 IPR000270 GO:0005515
Vifa3g03500 180 Pfam AUX/IAA family 53 176 IPR033389 -
Vifa3g03500 180 SUPERFAMILY CAD & PB1 domains 88 171 - -
Vifa3g03500 180 Gene3D - 82 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03500 Vifa-Chr3 1008677300 1008678192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03500 83 171 B3 DNA Binding Superfamily AT1G19220 38.202 4.19e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vifa3g03500 AUX_IAA 9.9e-25 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03500 3 1008677300 1008678192 Vifa3g03500 3 1008677300 1008678192 ECH