Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03498 ATGCACACAGAAAACGACGTTGAAGTCAAAAAAGTATTCATCGGAGCAGGATGCAACCGAATAGTCAACAACGTTTCATGGGGTGCTTCTGGTTTGGTCTCTTTCGGTGCTCAAAACGCCGTTGCCATTTTCTCCCCAAAGAGTGCTCAAATTTTGACCACTCTTCCTGCTCATAAAGCGGTTGTGAATTGCACTCATTGGCTTCCAACAAGTAAATTTCTATTTAAAGCAAAAGAATTGGAGCGGCATTATTTGCTATCTGGAGATGCAGATGGTGCTATTATTCTCTGGGAATTGTCCCTTGTTGATGGGAAGTGGAGGCAAGTGTCGCAAGTACCACAATCACACAAGAAAGGGGTAACATGCATTAATGGAATTATGGTTTCTCAAACTGAAGCAATGTTTGCATCCACTTCTTCAGATGGTAGTGTTTGTGTATGGGAACTTGTATTTCCATCGACAAGCAGTGGTGACTGTAAATTATCATGTCTGGAGTCTTTCTCTGTCGGTTCTAAATCTATGGTAGCCCTATCCATCGCGGAACTGCCTGGATGTAGTGGTCAAATCGTCCTTGCAATGGGAGGATTGGATAATAAGATTCACCTTTACTGTGGTGGAAGGACAGGAAAGTTTGTACACGCGTGTGAATTAAAAGGGCATACAGATTGGGTCCGGAGTTTGGATTTCTCACTACCTGTAAGCATCAATGGGGAAGTAAACAATCTATTTCTGGTAAGTTCATCACAGGATAAATGTATACGAATTTGGAAGATGGCATTACGCAGCTCGTTGCCCAACGGGAATGGCGTATACAAGAAGGAAGAAACAAGCTTATCATCATATATAGAAGGTCCTGTACTTGTTGCTGGTTCATCCTCATTTCAAATATCCTTAGAATCTCTCTTAATTGGACATGAGGATTGGGTATATTCAGTAGCGTGGCAACCCCCTTTGGTTGCATCCAGTGAAGGAGATGCCTATTATCAACCACAAAGCATTTTATCTGCATCAATGGACAAGACCATGATGATCTGGCAGCCTGAAAAGACTTCTGGTGTGTGGATGAATGTGGTCACCGTTGGCGAACTAAGCCACTGTGCTTTGGGGTTCTATGGTGGTCATTGGAGCCCAAATGGAGATTCAATTTTAGCACATGGATACGGTGGATCTTTTCATCTTTGGAAAAATGTTGGTGATGACAACTGGCTTACTCAAAAGGTTCCCTCTGGTCATTTTGCATCGGTGACTGATATAGCATGGGGTAGATCCGGTGATTACATTATATCAGCCAGCCATGACCAGACAACTAGAATTTATGCGCCGTGGAAATTGGAGGTTCCTCACAAAGATGGAGAACTTTGGTATGAGATTTCCCGCCCTCAGGTTCATGGTCATGATATAAATTGTATGACAGTTGTTCATAGTAAGGGGAATCATCGTTTTGTCGGTGGAGCTGATGAGAAAGTTGCTAGAGTGTTCGAAGCCCCGTTATCATTTTTGAAAACATTAAGTAATGCAACTTTGCAGAAATCTTGTTATTCTGATAATGACTTGACAAACGTTCAGATTTTGGGTGCAAATATGTCAGCTCTTGGGCTATCACAAAAGCCTATTTATGTTCAAGCTGTACAGGAGACCCCTGATAAAAATGGGATTGACAGTCTCGACACCTTTGAAACTGTGCCTGACGCAGTTCCAACTGTTTTTACTGAACCTCCAATTGAAGATCAACTGGCATGGCACACACTCTGGCCTGAATCACATAAACTCTATGGTCATGGAAATGAACTATTTTCTCTATGTTGTGATCATAAGGGCGAGCTTGTTGCTTCTTCATGTAAGGCCCAATCTACTGCTGTGGCAGAGGTATGGCTATGGCAGGTTGGTTCATGGAAAGCAGTTGGTCGCTTGCAATCTCACAGTTTAACAGTAACACAGATGGAATTCTCTCACGATGACAACTTTCTTTTGACTGTCTCAAGGGATCGTCAGTTCTCCATTTTTACCGTCACAAGAACAGGAACCGGTGAAATCAGTTATAGTCTTCTTGCGAGGCAGGAAGGACACAAGCGGATTATCTGGTCATGTTCTTGGAATCCACACGGCCATGAATTTGCAACAGGTTCACGCGACAAAACAGTGAAAATCTGGGCCGTAGAGAAGGAATCATCATCAGTAAGGCCCCTTATGAGTCTACCTCAATTTACAAGCAGTGTGACAGCATTATCTTGGGCTGGTCTCCCTCATGGAAAAAACATCGGAGTTCTAGCTGTTGGAATGGAAAACGGCCAAATAGAATTGTGGAATCTGTCCTATAACAGACAAGACAATGCACCGGGTTCCACCACTGGTCTTCTTGTTCGTGTTGATCCTTTTATATGTCATGCATCTACCGTAAACCGTCTGGCATGGAGGGAAACTGAGGAAGATAACAAGAGTCTGCAACTTGCTTCTTGTGGAGCTGATAATTGCGTAAGAGTGTTTGATGTAACTGTTGAGTAA 2502 0.4301 MHTENDVEVKKVFIGAGCNRIVNNVSWGASGLVSFGAQNAVAIFSPKSAQILTTLPAHKAVVNCTHWLPTSKFLFKAKELERHYLLSGDADGAIILWELSLVDGKWRQVSQVPQSHKKGVTCINGIMVSQTEAMFASTSSDGSVCVWELVFPSTSSGDCKLSCLESFSVGSKSMVALSIAELPGCSGQIVLAMGGLDNKIHLYCGGRTGKFVHACELKGHTDWVRSLDFSLPVSINGEVNNLFLVSSSQDKCIRIWKMALRSSLPNGNGVYKKEETSLSSYIEGPVLVAGSSSFQISLESLLIGHEDWVYSVAWQPPLVASSEGDAYYQPQSILSASMDKTMMIWQPEKTSGVWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGDDNWLTQKVPSGHFASVTDIAWGRSGDYIISASHDQTTRIYAPWKLEVPHKDGELWYEISRPQVHGHDINCMTVVHSKGNHRFVGGADEKVARVFEAPLSFLKTLSNATLQKSCYSDNDLTNVQILGANMSALGLSQKPIYVQAVQETPDKNGIDSLDTFETVPDAVPTVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGELVASSCKAQSTAVAEVWLWQVGSWKAVGRLQSHSLTVTQMEFSHDDNFLLTVSRDRQFSIFTVTRTGTGEISYSLLARQEGHKRIIWSCSWNPHGHEFATGSRDKTVKIWAVEKESSSVRPLMSLPQFTSSVTALSWAGLPHGKNIGVLAVGMENGQIELWNLSYNRQDNAPGSTTGLLVRVDPFICHASTVNRLAWRETEEDNKSLQLASCGADNCVRVFDVTVE 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03498 833 PANTHER ELONGATOR COMPLEX PROTEIN 2 10 832 IPR037289 GO:0002098|GO:0033588
Vifa3g03498 833 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 258 IPR001680 GO:0005515
Vifa3g03498 833 FunFam Elongator acetyltransferase complex subunit 2 365 675 - -
Vifa3g03498 833 PRINTS G protein beta WD-40 repeat signature 705 719 IPR020472 -
Vifa3g03498 833 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Vifa3g03498 833 PRINTS G protein beta WD-40 repeat signature 85 99 IPR020472 -
Vifa3g03498 833 SMART WD40_4 105 148 IPR001680 GO:0005515
Vifa3g03498 833 SMART WD40_4 630 669 IPR001680 GO:0005515
Vifa3g03498 833 SMART WD40_4 785 829 IPR001680 GO:0005515
Vifa3g03498 833 SMART WD40_4 583 627 IPR001680 GO:0005515
Vifa3g03498 833 SMART WD40_4 450 494 IPR001680 GO:0005515
Vifa3g03498 833 SMART WD40_4 48 98 IPR001680 GO:0005515
Vifa3g03498 833 SMART WD40_4 679 718 IPR001680 GO:0005515
Vifa3g03498 833 SMART WD40_4 725 769 IPR001680 GO:0005515
Vifa3g03498 833 SMART WD40_4 208 257 IPR001680 GO:0005515
Vifa3g03498 833 SMART WD40_4 356 395 IPR001680 GO:0005515
Vifa3g03498 833 SMART WD40_4 400 440 IPR001680 GO:0005515
Vifa3g03498 833 SMART WD40_4 295 346 IPR001680 GO:0005515
Vifa3g03498 833 Gene3D - 574 683 IPR015943 GO:0005515
Vifa3g03498 833 ProSiteProfiles Trp-Asp (WD) repeats profile. 686 727 IPR001680 GO:0005515
Vifa3g03498 833 Gene3D - 286 405 IPR015943 GO:0005515
Vifa3g03498 833 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 439 IPR001680 GO:0005515
Vifa3g03498 833 Gene3D - 152 265 IPR015943 GO:0005515
Vifa3g03498 833 SUPERFAMILY WD40 repeat-like 374 831 IPR036322 GO:0005515
Vifa3g03498 833 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 686 720 - -
Vifa3g03498 833 ProSiteProfiles Trp-Asp (WD) repeats profile. 637 670 IPR001680 GO:0005515
Vifa3g03498 833 SUPERFAMILY WD40 repeat-like 17 439 IPR036322 GO:0005515
Vifa3g03498 833 Gene3D - 406 516 IPR015943 GO:0005515
Vifa3g03498 833 Pfam WD domain, G-beta repeat 110 147 IPR001680 GO:0005515
Vifa3g03498 833 Pfam WD domain, G-beta repeat 302 345 IPR001680 GO:0005515
Vifa3g03498 833 Pfam WD domain, G-beta repeat 216 257 IPR001680 GO:0005515
Vifa3g03498 833 Pfam WD domain, G-beta repeat 50 97 IPR001680 GO:0005515
Vifa3g03498 833 Pfam WD domain, G-beta repeat 405 439 IPR001680 GO:0005515
Vifa3g03498 833 Pfam WD domain, G-beta repeat 687 717 IPR001680 GO:0005515
Vifa3g03498 833 Gene3D - 1 150 IPR015943 GO:0005515
Vifa3g03498 833 Gene3D - 684 833 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03498 Vifa-Chr3 1007550328 1007555129 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03498 3 1007550328 1007555129 Vifa3g03498 3 1007550328 1007555129 ECH